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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = GTA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.116159 (3 seq.)
>W2011665658
SORS01000001
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.4 [SORS]
105111
105194
+
Tyr
GTA
[ENA]
¡û
>W2011665692
SORT01000009
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.3 [SORT]
33370
33453
+
Tyr
GTA
[ENA]
¡û
>W2011665711
SORU01000002
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.2 [SORU]
46307
46390
+
Tyr
GTA
[ENA]
¡û
Identical group No.126468 (1 seq.)
>W2011536441
SCKI01000002
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B11 [SCKI]
149221
149138
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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