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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = TAA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60289 (1 seq.)
>W2011536467
SCKI01000014
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B11 [SCKI]
53983
54069
+
Leu
TAA
[ENA]
¡û
Identical group No.60290 (1 seq.)
>W2011536819
SCKR01000174
Fidelibacterota
Candidatus Marinimicrobia bacterium D37C11 [SCKR]
3228
3142
-
Leu
TAA
[ENA]
¡û
Identical group No.67533 (1 seq.)
>W2011536566
SCKK01000074
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-2 [SCKK]
2442
2527
+
Leu
TAA
[ENA]
¡û
Identical group No.72961 (2 seq.)
>W2011665686
SORT01000005
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.3 [SORT]
69415
69500
+
Leu
TAA
[ENA]
¡û
>W2011665739
SORU01000040
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.2 [SORU]
8079
7994
-
Leu
TAA
[ENA]
¡û
Identical group No.79803 (1 seq.)
>W2011536498
SCKJ01000005
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
269596
269681
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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