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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = TAG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.89214 (2 seq.)
>W2011665669
SORS01000015
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.4 [SORS]
16048
15964
-
Leu
TAG
[ENA]
¡û
>W2011665680
SORT01000004
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.3 [SORT]
65464
65380
-
Leu
TAG
[ENA]
¡û
Identical group No.104547 (1 seq.)
>W2011536455
SCKI01000011
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B11 [SCKI]
68218
68303
+
Leu
TAG
[ENA]
¡û
Identical group No.108814 (1 seq.)
>W2011536510
SCKJ01000007
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
22735
22651
-
Leu
TAG
[ENA]
¡û
Identical group No.116114 (1 seq.)
>W2011536544
SCKK01000024
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-2 [SCKK]
15276
15193
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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