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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = TCA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.3402 (1 seq.)
>W2011536553
SCKK01000045
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-2 [SCKK]
4499
4592
+
SeC
TCA
[ENA]
¡û
Identical group No.4188 (2 seq.)
>W2030038726
SCKN01000003
Fidelibacterota
Candidatus Marinimicrobia bacterium T3L19 [SCKN]
297184
297277
+
SeC
TCA
[ENA]
¡û
>W2030038727
SCKO01000038
Fidelibacterota
Candidatus Marinimicrobia bacterium T3L1 [SCKO]
3507
3414
-
SeC
TCA
[ENA]
¡û
Identical group No.6426 (1 seq.)
>W2030038721
SCKJ01000005
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
183169
183262
+
SeC
TCA
[ENA]
¡û
Identical group No.6572 (2 seq.)
>W2011536601
SCKM01000020
Fidelibacterota
Candidatus Marinimicrobia bacterium T3L11 [SCKM]
5193
5099
-
SeC
TCA
[ENA]
¡û
>W2011536731
SCKP01000016
Fidelibacterota
Candidatus Marinimicrobia bacterium D37C17 [SCKP]
33982
34076
+
SeC
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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