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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = TCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.228189 (7 seq.)
>WENV170171527
CEOQ01060614
[CEOQ] marine metagenome genome assembly TARA_034_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
364
440
+
Arg
TCG
[ENA]
¡û
>WENV170239173
CEQN01021583
[CEQN] marine metagenome genome assembly TARA_078_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
164
88
-
Arg
TCG
[ENA]
¡û
>WENV170848842
MDTA01085841
[MDTA] marine metagenome; seawater
837
763
-
Arg
TCG
[ENA]
¡û
>W2011411370
RDRY01000006
Fidelibacterota
Candidatus Marinimicrobia bacterium PRS2 [RDRY]
37089
37015
-
Arg
TCG
[ENA]
¡û
>W2011536580
SCKL01000075
Fidelibacterota
Candidatus Marinimicrobia bacterium T3L14 [SCKL]
5644
5718
+
Arg
TCG
[ENA]
¡û
>W2011536602
SCKM01000027
Fidelibacterota
Candidatus Marinimicrobia bacterium T3L11 [SCKM]
22223
22149
-
Arg
TCG
[ENA]
¡û
>W2011536732
SCKP01000017
Fidelibacterota
Candidatus Marinimicrobia bacterium D37C17 [SCKP]
32611
32537
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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