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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = TGC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.346963 (2 seq.)
>W2011665674
SORS01000043
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.4 [SORS]
5296
5223
-
Ala
TGC
[ENA]
¡û
>W2011665682
SORT01000004
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.3 [SORT]
55430
55357
-
Ala
TGC
[ENA]
¡û
Identical group No.411887 (2 seq.)
>W2011536447
SCKI01000003
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B11 [SCKI]
93647
93720
+
Ala
TGC
[ENA]
¡û
>W2011536493
SCKJ01000004
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
628
701
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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