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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = TTC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184565 (1 seq.)
>W2011665730
SORU01000019
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.2 [SORU]
4771
4846
+
Glu
TTC
[ENA]
¡û
Identical group No.508484 (1 seq.)
>W2011536449
SCKI01000006
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B11 [SCKI]
117647
117719
+
Glu
TTC
[ENA]
¡û
Identical group No.520831 (1 seq.)
>W2011536509
SCKJ01000007
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
91673
91601
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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