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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fidelibacterota
Anticodon = TTG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.488802 (2 seq.)
>W2011665690
SORT01000007
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.3 [SORT]
60460
60532
+
Gln
TTG
[ENA]
¡û
>W2011665709
SORU01000001
Fidelibacterota
Candidatus Marinimicrobia bacterium MT.SAG.2 [SORU]
91847
91919
+
Gln
TTG
[ENA]
¡û
Identical group No.537700 (1 seq.)
>W2011536523
SCKK01000001
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-2 [SCKK]
127235
127306
+
Gln
TTG
[ENA]
¡û
Identical group No.559329 (1 seq.)
>W2011536432
SCKI01000001
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B11 [SCKI]
148255
148328
+
Gln
TTG
[ENA]
¡û
Identical group No.564900 (1 seq.)
>W2011536477
SCKJ01000001
Fidelibacterota
Candidatus Marinimicrobia bacterium TS1B10-1 [SCKJ]
85416
85345
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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