This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fusobacteria
Anticodon = CAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.115364 (12 seq.)
>PL171000974
CP013332
Fusobacteria
Fusobacterium hwasookii ChDC F174 plasmid:unnamed1
15269
15183
-
Leu
CAA
[ENA]
¡û
>WENV180709553
ODFJ01138867
[ODFJ] human metagenome; G_DNA_Tongue dorsum
111
197
+
Leu
CAA
[ENA]
¢þ
>WENV180720954
ODGK01000003
[ODGK] human metagenome; G_DNA_Palatine Tonsils
25457
25543
+
Leu
CAA
[ENA]
¢þ
>WENV180728254
ODGU01033791
[ODGU] human metagenome; G_DNA_Supragingival plaque
159
245
+
Leu
CAA
[ENA]
¢þ
>W141079019
ATKF01000110
Fusobacteriota
Fusobacterium hwasookii ChDC F174 [ATKF]
116
202
+
Leu
CAA
[ENA]
¡û
>W141079080
ATKH01000170
Fusobacteriota
Fusobacterium hwasookii ChDC F206 [ATKH]
7571
7485
-
Leu
CAA
[ENA]
¡û
>WENV180833118
ODKC01014325
[ODKC] human metagenome; G_DNA_Supragingival plaque
1939
1853
-
Leu
CAA
[ENA]
¢þ
>WENV180987014
ODVK01003199
[ODVK] human metagenome; G_DNA_Supragingival plaque
4105
4191
+
Leu
CAA
[ENA]
¢þ
>WENV180989276
ODVL01086045
[ODVL] human metagenome; G_DNA_Tongue dorsum
340
254
-
Leu
CAA
[ENA]
¢þ
>WENV181050467
ODYD01019870
[ODYD] human metagenome; G_DNA_Supragingival plaque
1581
1495
-
Leu
CAA
[ENA]
¢þ
>WENV181079861
OEAS01017542
[OEAS] human metagenome; G_DNA_Supragingival plaque
365
451
+
Leu
CAA
[ENA]
¢þ
>C161055464
CP013336
Fusobacteriota
Fusobacterium hwasookii ChDC F206 [CP013336]
1135715
1135801
+
Leu
CAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK