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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fusobacteria
Anticodon = CAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.75432 (59 seq.)
>PL171000974
CP013332
Fusobacteria
Fusobacterium hwasookii ChDC F174 plasmid:unnamed1
15269
15183
-
Leu
CAA
[ENA]
¡û
>WENV180422344
OBVS01018068
[OBVS] human gut metagenome; faeces
2
88
+
Leu
CAA
[ENA]
¢þ
>WENV180709553
ODFJ01138867
[ODFJ] human metagenome; G_DNA_Tongue dorsum
111
197
+
Leu
CAA
[ENA]
¢þ
>WENV180720954
ODGK01000003
[ODGK] human metagenome; G_DNA_Palatine Tonsils
25457
25543
+
Leu
CAA
[ENA]
¢þ
>WENV180728254
ODGU01033791
[ODGU] human metagenome; G_DNA_Supragingival plaque
159
245
+
Leu
CAA
[ENA]
¢þ
>WENV180732859
ODGY01005917
[ODGY] human metagenome; G_DNA_Supragingival plaque
893
807
-
Leu
CAA
[ENA]
¢þ
>WENV180739021
ODHD01002799
[ODHD] human metagenome; G_DNA_Supragingival plaque
1348
1434
+
Leu
CAA
[ENA]
¢þ
>WENV180751653
ODHS01097127
[ODHS] human metagenome; G_DNA_Supragingival plaque
143
229
+
Leu
CAA
[ENA]
¢þ
>WENV180782151
ODIP01026428
[ODIP] human metagenome; G_DNA_Supragingival plaque
337
251
-
Leu
CAA
[ENA]
¢þ
>WENV180789324
ODIS01458247
[ODIS] human metagenome; G_DNA_Supragingival plaque
71
157
+
Leu
CAA
[ENA]
¢þ
>WENV180796811
ODJB01014757
[ODJB] human metagenome; G_DNA_Supragingival plaque
2550
2464
-
Leu
CAA
[ENA]
¢þ
>WENV180800757
ODJD01000770
[ODJD] human metagenome; G_DNA_Supragingival plaque
6047
6133
+
Leu
CAA
[ENA]
¢þ
>WENV180808656
ODJK01000462
[ODJK] human metagenome; G_DNA_Subgingival plaque
159
245
+
Leu
CAA
[ENA]
¢þ
>W141079019
ATKF01000110
Fusobacteriota
Fusobacterium hwasookii ChDC F174 [ATKF]
116
202
+
Leu
CAA
[ENA]
¡û
>W141079038
ATKG01000041
Fusobacteriota
Fusobacterium hwasookii ChDC F300 [ATKG]
6782
6868
+
Leu
CAA
[ENA]
¡û
>W141079080
ATKH01000170
Fusobacteriota
Fusobacterium hwasookii ChDC F206 [ATKH]
7571
7485
-
Leu
CAA
[ENA]
¡û
>WENV180824567
ODJX01014544
[ODJX] human metagenome; G_DNA_Supragingival plaque
979
893
-
Leu
CAA
[ENA]
¢þ
>WENV180833118
ODKC01014325
[ODKC] human metagenome; G_DNA_Supragingival plaque
1939
1853
-
Leu
CAA
[ENA]
¢þ
>WENV180835516
ODKE01004415
[ODKE] human metagenome; G_DNA_Supragingival plaque
159
245
+
Leu
CAA
[ENA]
¢þ
>WENV180847185
ODKT01049168
[ODKT] human metagenome; G_DNA_Supragingival plaque
714
800
+
Leu
CAA
[ENA]
¢þ
>WENV180863263
ODLG01024865
[ODLG] human metagenome; G_DNA_Buccal mucosa
197
111
-
Leu
CAA
[ENA]
¢þ
>WENV180914847
ODSZ01029165
[ODSZ] human metagenome; G_DNA_Buccal mucosa
295
209
-
Leu
CAA
[ENA]
¢þ
>WENV180924583
ODTK01008178
[ODTK] human metagenome; G_DNA_Supragingival plaque
3435
3349
-
Leu
CAA
[ENA]
¢þ
>WENV180945050
ODUC01062644
[ODUC] human metagenome; G_DNA_Supragingival plaque
153
239
+
Leu
CAA
[ENA]
¢þ
>WENV180946267
ODUD01024102
[ODUD] human metagenome; G_DNA_Tongue dorsum
71
157
+
Leu
CAA
[ENA]
¢þ
>WENV180973973
ODUW01035734
[ODUW] human metagenome; G_DNA_Supragingival plaque
159
245
+
Leu
CAA
[ENA]
¢þ
>WENV180978462
ODUZ01130220
[ODUZ] human metagenome; G_DNA_Tongue dorsum
75
161
+
Leu
CAA
[ENA]
¢þ
>WENV180984158
ODVF01133068
[ODVF] human metagenome; G_DNA_Supragingival plaque
198
284
+
Leu
CAA
[ENA]
¢þ
>WENV180987014
ODVK01003199
[ODVK] human metagenome; G_DNA_Supragingival plaque
4105
4191
+
Leu
CAA
[ENA]
¢þ
>WENV180989276
ODVL01086045
[ODVL] human metagenome; G_DNA_Tongue dorsum
340
254
-
Leu
CAA
[ENA]
¢þ
>WENV181020015
ODWU01035565
[ODWU] human metagenome; G_DNA_Supragingival plaque
161
247
+
Leu
CAA
[ENA]
¢þ
>WENV181050467
ODYD01019870
[ODYD] human metagenome; G_DNA_Supragingival plaque
1581
1495
-
Leu
CAA
[ENA]
¢þ
>WENV181064325
ODYP01020879
[ODYP] human metagenome; G_DNA_Supragingival plaque
1576
1490
-
Leu
CAA
[ENA]
¢þ
>WENV181066731
ODZI01001284
[ODZI] human metagenome; G_DNA_Supragingival plaque
5523
5609
+
Leu
CAA
[ENA]
¢þ
>WENV181070825
OEAE01013032
[OEAE] human metagenome; G_DNA_Supragingival plaque
161
247
+
Leu
CAA
[ENA]
¢þ
>WENV181075739
OEAP01000244
[OEAP] human metagenome; G_DNA_Supragingival plaque
39750
39664
-
Leu
CAA
[ENA]
¢þ
>WENV181079861
OEAS01017542
[OEAS] human metagenome; G_DNA_Supragingival plaque
365
451
+
Leu
CAA
[ENA]
¢þ
>WENV181090342
OEBC01000236
[OEBC] human metagenome; G_DNA_Supragingival plaque
26923
26837
-
Leu
CAA
[ENA]
¢þ
>WENV181109426
OEEJ01048421
[OEEJ] human metagenome; G_DNA_Tongue dorsum
249
335
+
Leu
CAA
[ENA]
¢þ
>WENV181114824
OEEO01006548
[OEEO] human metagenome; G_DNA_Supragingival plaque
159
245
+
Leu
CAA
[ENA]
¢þ
>WENV181124294
OEFQ01055411
[OEFQ] human metagenome; G_DNA_Supragingival plaque
176
90
-
Leu
CAA
[ENA]
¢þ
>WENV181136651
OEGI01022004
[OEGI] human metagenome; G_DNA_Supragingival plaque
139
225
+
Leu
CAA
[ENA]
¢þ
>WENV181137790
OEGJ01026011
[OEGJ] human metagenome; G_DNA_Supragingival plaque
471
557
+
Leu
CAA
[ENA]
¢þ
>WENV181144072
OEHM01072148
[OEHM] human metagenome; G_DNA_Supragingival plaque
196
110
-
Leu
CAA
[ENA]
¢þ
>WENV181146887
OEHQ01036577
[OEHQ] human metagenome; G_DNA_Supragingival plaque
638
552
-
Leu
CAA
[ENA]
¢þ
>WENV181153236
OEIA01035390
[OEIA] human metagenome; G_DNA_Supragingival plaque
816
730
-
Leu
CAA
[ENA]
¢þ
>WENV181155844
OEIE01000240
[OEIE] human metagenome; G_DNA_Supragingival plaque
17528
17442
-
Leu
CAA
[ENA]
¢þ
>WENV181159927
OEIK01000633
[OEIK] human metagenome; G_DNA_Supragingival plaque
19056
18970
-
Leu
CAA
[ENA]
¢þ
>WENV181180195
OEJT01120381
[OEJT] human metagenome; G_DNA_Supragingival plaque
182
96
-
Leu
CAA
[ENA]
¢þ
>WENV181182623
OEJV01022435
[OEJV] human metagenome; G_DNA_Supragingival plaque
426
512
+
Leu
CAA
[ENA]
¢þ
>W141284865
JANA01000053
Fusobacteriota
Fusobacterium sp. OBRC1 [JANA]
174221
174135
-
Leu
CAA
[ENA]
¡û
>W141286764
JAOZ01000004
Fusobacteriota
Fusobacterium nucleatum 13_3C [JAOZ]
7179
7265
+
Leu
CAA
[ENA]
¡û
>C181058881
CP022123
Fusobacteriota
Fusobacterium polymorphum KCOM 1275 [CP022123]
1088428
1088342
-
Leu
CAA
-
¡û
>W1910929034
NIRO01000004
Fusobacteriota
Fusobacterium polymorphum [NIRO]
98889
98803
-
Leu
CAA
[ENA]
¡û
>W1911431750
NXMD01000099
Fusobacteriota
Fusobacterium nucleatum 12230 MIT 2016 [NXMD]
5931
5845
-
Leu
CAA
[ENA]
¡û
>W1810679090
QKOC01000002
Fusobacteriota
Fusobacterium nucleatum 12230 [QKOC]
8846
8932
+
Leu
CAA
[ENA]
¡û
>C161055430
CP013334
Fusobacteriota
Fusobacterium hwasookii ChDC F300 [CP013334]
1455131
1455045
-
Leu
CAA
[Ensembl]
¡û
>C161055464
CP013336
Fusobacteriota
Fusobacterium hwasookii ChDC F206 [CP013336]
1135715
1135801
+
Leu
CAA
-
¡û
>W121001377
ADDB01000021
Fusobacteriota
Fusobacterium polymorphum subsp. polymorphum F0401 [ADDB]
21360
21446
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK