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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fusobacteria
Anticodon = GTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.368454 (4 seq.)
>PL171000412
CP002282
Fusobacteria
Ilyobacter polytropus DSM 2926 plasmid:pILYOP01
74221
74296
+
Asn
GTT
[ENA]
¡û
>C11111508
CP002281
Fusobacteriota
Ilyobacter polytropus DSM 2926 [CP002281]
195072
195147
+
Asn
GTT
[Ensembl]
¡û
>C11111526
CP002281
Fusobacteriota
Ilyobacter polytropus DSM 2926 [CP002281]
1981278
1981203
-
Asn
GTT
[Ensembl]
¡û
>C11111533
CP002281
Fusobacteriota
Ilyobacter polytropus DSM 2926 [CP002281]
1879048
1878973
-
Asn
GTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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