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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fusobacteria
Anticodon = TAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.559021 (8 seq.)
>PL171000424
CP002282
Fusobacteria
Ilyobacter polytropus DSM 2926 plasmid:pILYOP01
245929
246004
+
Val
TAC
[ENA]
¡û
>PL171000437
CP002282
Fusobacteria
Ilyobacter polytropus DSM 2926 plasmid:pILYOP01
919858
919783
-
Val
TAC
[ENA]
¡û
>WENV183710227
PDWI01041874
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3741
3816
+
Val
TAC
[ENA]
¢þ
>WENV183715731
PDWI01259482
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
380
455
+
Val
TAC
[ENA]
¢þ
>WENV183720712
PDWJ01042603
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2261
2336
+
Val
TAC
[ENA]
¢þ
>WENV183722116
PDWJ01106644
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
119
194
+
Val
TAC
[ENA]
¢þ
>C11111520
CP002281
Fusobacteriota
Ilyobacter polytropus DSM 2926 [CP002281]
2009908
2009833
-
Val
TAC
[Ensembl]
¡û
>C11111527
CP002281
Fusobacteriota
Ilyobacter polytropus DSM 2926 [CP002281]
1958492
1958417
-
Val
TAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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