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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fusobacteria
Anticodon = TAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.388238 (28 seq.)
>W1710932086
LOHY01000091
Fusobacteriota
Pseudostreptobacillus hongkongensis [LOHY]
74
149
+
Val
TAC
[ENA]
¡û
>W1710932092
LOHY01000132
Fusobacteriota
Pseudostreptobacillus hongkongensis [LOHY]
12211
12286
+
Val
TAC
[ENA]
¡û
>PL171000424
CP002282
Fusobacteria
Ilyobacter polytropus DSM 2926 plasmid:pILYOP01
245929
246004
+
Val
TAC
[ENA]
¡û
>PL171000437
CP002282
Fusobacteria
Ilyobacter polytropus DSM 2926 plasmid:pILYOP01
919858
919783
-
Val
TAC
[ENA]
¡û
>WENV180154270
OAUS01065137
[OAUS] human gut metagenome; faeces
245
170
-
Val
TAC
[ENA]
¡û
>WENV181363356
OFOU01000167
[OFOU] human gut metagenome; human gut
42724
42799
+
Val
TAC
[ENA]
¡û
>WENV181428354
OGCV01000210
[OGCV] metagenome; Human gut stool
18212
18137
-
Val
TAC
[ENA]
¡û
>WENV181507710
OGGP01000492
[OGGP] metagenome; Human gut stool
9886
9961
+
Val
TAC
[ENA]
¡û
>WENV181518073
OGHA01000878
[OGHA] metagenome; Human gut stool
4279
4204
-
Val
TAC
[ENA]
¡û
>WENV181794759
OGRS01002411
[OGRS] human gut metagenome; faeces
6224
6149
-
Val
TAC
[ENA]
¡û
>WENV181794779
OGRS01002610
[OGRS] human gut metagenome; faeces
1967
2042
+
Val
TAC
[ENA]
¡û
>WENV181795010
OGRS01010256
[OGRS] human gut metagenome; faeces
675
600
-
Val
TAC
[ENA]
¡û
>WENV182177561
OHNK01000973
[OHNK] human gut metagenome; feces
13355
13430
+
Val
TAC
[ENA]
¡û
>WENV183709067
PDWI01023447
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
194
269
+
Val
TAC
[ENA]
¡û
>WENV183710227
PDWI01041874
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3741
3816
+
Val
TAC
[ENA]
¡û
>WENV183712948
PDWI01119743
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
389
314
-
Val
TAC
[ENA]
¡û
>WENV183713056
PDWI01122836
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1686
1761
+
Val
TAC
[ENA]
¡û
>WENV183714918
PDWI01211338
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
254
179
-
Val
TAC
[ENA]
¡û
>WENV183715731
PDWI01259482
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
380
455
+
Val
TAC
[ENA]
¡û
>WENV183721848
PDWJ01090783
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1214
1139
-
Val
TAC
[ENA]
¡û
>WENV183722116
PDWJ01106644
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
119
194
+
Val
TAC
[ENA]
¡û
>WENV170005282
AMCI01001331
[AMCI] gut metagenome; fecal sample from gut
411
336
-
Val
TAC
[ENA]
¡û
>WENV170005438
AMCI01004323
[AMCI] gut metagenome; fecal sample from gut
51
126
+
Val
TAC
[ENA]
¡û
>WENV170005608
AMCI01008624
[AMCI] gut metagenome; fecal sample from gut
1
76
+
Val
TAC
[ENA]
¡û
>C11111520
CP002281
Fusobacteriota
Ilyobacter polytropus DSM 2926 [CP002281]
2009908
2009833
-
Val
TAC
[Ensembl]
¡û
>C11111527
CP002281
Fusobacteriota
Ilyobacter polytropus DSM 2926 [CP002281]
1958492
1958417
-
Val
TAC
[Ensembl]
¡û
>W1610789555
LOHY01000091
Fusobacteriota
Pseudostreptobacillus hongkongensis [LOHY]
74
149
+
Val
TAC
[ENA]
¡û
>W1610789561
LOHY01000132
Fusobacteriota
Pseudostreptobacillus hongkongensis [LOHY]
12211
12286
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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