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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fusobacteria
Anticodon = TAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.225507 (4 seq.)
>PL171000414
CP002282
Fusobacteria
Ilyobacter polytropus DSM 2926 plasmid:pILYOP01
82018
82101
+
Leu
TAG
[ENA]
¡û
>PL171000427
CP002282
Fusobacteria
Ilyobacter polytropus DSM 2926 plasmid:pILYOP01
246208
246291
+
Leu
TAG
[ENA]
¡û
>C11111507
CP002281
Fusobacteriota
Ilyobacter polytropus DSM 2926 [CP002281]
40171
40254
+
Leu
TAG
[Ensembl]
¡û
>C11111541
CP002281
Fusobacteriota
Ilyobacter polytropus DSM 2926 [CP002281]
1266573
1266490
-
Leu
TAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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