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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fusobacteria
Anticodon = TAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253561 (13 seq.)
>PL171000414
CP002282
Fusobacteria
Ilyobacter polytropus DSM 2926 plasmid:pILYOP01
82018
82101
+
Leu
TAG
[ENA]
¡û
>PL171000427
CP002282
Fusobacteria
Ilyobacter polytropus DSM 2926 plasmid:pILYOP01
246208
246291
+
Leu
TAG
[ENA]
¡û
>W2310021503
BSDY01000003
Fusobacteriota
Propionigenium maris DSM 9537 10succ1 [BSDY]
264249
264166
-
Leu
TAG
[ENA]
¡û
>W2310021504
BSDY01000005
Fusobacteriota
Propionigenium maris DSM 9537 10succ1 [BSDY]
141271
141354
+
Leu
TAG
[ENA]
¡û
>W2310021518
BSDY01000010
Fusobacteriota
Propionigenium maris DSM 9537 10succ1 [BSDY]
127476
127559
+
Leu
TAG
[ENA]
¡û
>W2310021520
BSDY01000010
Fusobacteriota
Propionigenium maris DSM 9537 10succ1 [BSDY]
119975
119892
-
Leu
TAG
[ENA]
¡û
>W2310021523
BSDY01000011
Fusobacteriota
Propionigenium maris DSM 9537 10succ1 [BSDY]
85195
85278
+
Leu
TAG
[ENA]
¡û
>W2310021542
BSDY01000018
Fusobacteriota
Propionigenium maris DSM 9537 10succ1 [BSDY]
25554
25637
+
Leu
TAG
[ENA]
¡û
>W2310021560
BSDY01000034
Fusobacteriota
Propionigenium maris DSM 9537 10succ1 [BSDY]
12228
12311
+
Leu
TAG
[ENA]
¡û
>W2310021565
BSDY01000034
Fusobacteriota
Propionigenium maris DSM 9537 10succ1 [BSDY]
13272
13355
+
Leu
TAG
[ENA]
¡û
>W2310021569
BSDY01000035
Fusobacteriota
Propionigenium maris DSM 9537 10succ1 [BSDY]
563
646
+
Leu
TAG
[ENA]
¡û
>C11111507
CP002281
Fusobacteriota
Ilyobacter polytropus DSM 2926 [CP002281]
40171
40254
+
Leu
TAG
[Ensembl]
¡û
>C11111541
CP002281
Fusobacteriota
Ilyobacter polytropus DSM 2926 [CP002281]
1266573
1266490
-
Leu
TAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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