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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fusobacteria
Anticodon = TTC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.741522 (2 seq.)
>PL171000418
CP002282
Fusobacteria
Ilyobacter polytropus DSM 2926 plasmid:pILYOP01
245398
245472
+
Glu
TTC
[ENA]
¡û
>C11111517
CP002281
Fusobacteriota
Ilyobacter polytropus DSM 2926 [CP002281]
2010157
2010083
-
Glu
TTC
[Ensembl]
¡û
Identical group No.775809 (3 seq.)
>PL171000423
CP002282
Fusobacteria
Ilyobacter polytropus DSM 2926 plasmid:pILYOP01
245846
245920
+
Glu
TTC
[ENA]
¡û
>PL171000436
CP002282
Fusobacteria
Ilyobacter polytropus DSM 2926 plasmid:pILYOP01
919940
919866
-
Glu
TTC
[ENA]
¡û
>PL171000438
CP002282
Fusobacteria
Ilyobacter polytropus DSM 2926 plasmid:pILYOP01
919777
919703
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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