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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fusobacteria
Anticodon = TTG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.664751 (80 seq.)
>W1711096441
LTHT01000050
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
18994
19068
+
Gln
TTG
[ENA]
¡û
>W1711096470
LTHT01000294
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
8921
8847
-
Gln
TTG
[ENA]
¡û
>PL171000432
CP002282
Fusobacteria
Ilyobacter polytropus DSM 2926 plasmid:pILYOP01
942839
942765
-
Gln
TTG
[ENA]
¡û
>WENV180154186
OAUS01035476
[OAUS] human gut metagenome; faeces
81
155
+
Gln
TTG
[ENA]
¢þ
>WENV181047486
ODXZ01008374
[ODXZ] human metagenome; G_DNA_Stool
907
833
-
Gln
TTG
[ENA]
¢þ
>WENV181340637
OFMH01000709
[OFMH] human gut metagenome; human gut
16931
16857
-
Gln
TTG
[ENA]
¢þ
>WENV181363260
OFOU01000036
[OFOU] human gut metagenome; human gut
50690
50616
-
Gln
TTG
[ENA]
¢þ
>WENV181363593
OFOU01000713
[OFOU] human gut metagenome; human gut
7997
8071
+
Gln
TTG
[ENA]
¢þ
>WENV181427943
OGCU01000314
[OGCU] metagenome; Human gut stool
24418
24344
-
Gln
TTG
[ENA]
¢þ
>WENV181428303
OGCV01000005
[OGCV] metagenome; Human gut stool
74742
74816
+
Gln
TTG
[ENA]
¢þ
>WENV181428365
OGCV01000288
[OGCV] metagenome; Human gut stool
8580
8506
-
Gln
TTG
[ENA]
¢þ
>WENV181432446
OGDD01004519
[OGDD] metagenome; Human gut stool
4045
3971
-
Gln
TTG
[ENA]
¢þ
>WENV181454487
OGED01003552
[OGED] metagenome; Human gut stool
1340
1266
-
Gln
TTG
[ENA]
¢þ
>WENV181458552
OGEK01000095
[OGEK] metagenome; Human gut stool
22727
22653
-
Gln
TTG
[ENA]
¢þ
>WENV181458742
OGEK01000409
[OGEK] metagenome; Human gut stool
32235
32309
+
Gln
TTG
[ENA]
¢þ
>WENV181461233
OGEM01001581
[OGEM] metagenome; Human gut stool
8675
8601
-
Gln
TTG
[ENA]
¢þ
>WENV181467200
OGER01001034
[OGER] metagenome; Human gut stool
19648
19722
+
Gln
TTG
[ENA]
¢þ
>WENV181474183
OGFC01002686
[OGFC] metagenome; Human gut stool
3728
3654
-
Gln
TTG
[ENA]
¢þ
>WENV181507783
OGGP01001218
[OGGP] metagenome; Human gut stool
8496
8570
+
Gln
TTG
[ENA]
¢þ
>WENV181518476
OGHA01020524
[OGHA] metagenome; Human gut stool
1098
1024
-
Gln
TTG
[ENA]
¢þ
>WENV181540023
OGIA01001898
[OGIA] metagenome; Human gut stool
6463
6389
-
Gln
TTG
[ENA]
¢þ
>WENV181540114
OGIA01004476
[OGIA] metagenome; Human gut stool
8
82
+
Gln
TTG
[ENA]
¢þ
>WENV181557232
OGIV01005197
[OGIV] metagenome; Human gut stool
4111
4185
+
Gln
TTG
[ENA]
¢þ
>WENV181557822
OGIW01000241
[OGIW] metagenome; Human gut stool
41417
41491
+
Gln
TTG
[ENA]
¢þ
>WENV181560398
OGJC01000129
[OGJC] metagenome; Human gut stool
75581
75655
+
Gln
TTG
[ENA]
¢þ
>WENV181561421
OGJD01002271
[OGJD] metagenome; Human gut stool
2608
2534
-
Gln
TTG
[ENA]
¢þ
>WENV181579600
OGJZ01000351
[OGJZ] metagenome; Human gut stool
43278
43352
+
Gln
TTG
[ENA]
¢þ
>WENV181582470
OGKB01009042
[OGKB] metagenome; Human gut stool
864
790
-
Gln
TTG
[ENA]
¢þ
>WENV181627630
OGMN01002029
[OGMN] metagenome; Human gut stool
1072
998
-
Gln
TTG
[ENA]
¢þ
>WENV181794871
OGRS01004531
[OGRS] human gut metagenome; faeces
79
5
-
Gln
TTG
[ENA]
¢þ
>WENV181859675
OGWQ01005564
[OGWQ] human gut metagenome; faeces
3684
3610
-
Gln
TTG
[ENA]
¢þ
>WENV181878427
OGXE01003262
[OGXE] human gut metagenome; faeces
9312
9238
-
Gln
TTG
[ENA]
¢þ
>WENV181892236
OGXP01000650
[OGXP] human gut metagenome; faeces
2266
2340
+
Gln
TTG
[ENA]
¢þ
>WENV181892367
OGXP01001239
[OGXP] human gut metagenome; faeces
9587
9513
-
Gln
TTG
[ENA]
¢þ
>WENV181947571
OGZD01010231
[OGZD] human gut metagenome; faeces
103
29
-
Gln
TTG
[ENA]
¢þ
>WENV181947995
OGZE01000147
[OGZE] human gut metagenome; faeces
15061
14987
-
Gln
TTG
[ENA]
¢þ
>WENV181948120
OGZE01000477
[OGZE] human gut metagenome; faeces
21164
21090
-
Gln
TTG
[ENA]
¢þ
>WENV181958695
OGZM01000308
[OGZM] human gut metagenome; faeces
62063
61989
-
Gln
TTG
[ENA]
¢þ
>WENV181959015
OGZM01001181
[OGZM] human gut metagenome; faeces
20881
20955
+
Gln
TTG
[ENA]
¢þ
>WENV181965709
OGZT01002626
[OGZT] human gut metagenome; faeces
76
2
-
Gln
TTG
[ENA]
¢þ
>WENV181970890
OGZY01000218
[OGZY] human gut metagenome; faeces
15896
15970
+
Gln
TTG
[ENA]
¢þ
>WENV181993965
OHAS01007301
[OHAS] human gut metagenome; faeces
5787
5713
-
Gln
TTG
[ENA]
¢þ
>WENV182015775
OHBR01026555
[OHBR] human gut metagenome; feces
516
442
-
Gln
TTG
[ENA]
¢þ
>WENV182124208
OHJQ01006410
[OHJQ] human gut metagenome; feces
941
867
-
Gln
TTG
[ENA]
¢þ
>WENV182138557
OHKN01016892
[OHKN] human gut metagenome; feces
734
660
-
Gln
TTG
[ENA]
¢þ
>WENV182227789
OHRG01007198
[OHRG] human gut metagenome; feces
2182
2108
-
Gln
TTG
[ENA]
¢þ
>WENV182228699
OHRH01015040
[OHRH] human gut metagenome; feces
323
397
+
Gln
TTG
[ENA]
¢þ
>WENV182866562
OKRR01000475
[OKRR] human gut metagenome; faeces
13047
12973
-
Gln
TTG
[ENA]
¢þ
>WENV182866585
OKRR01000546
[OKRR] human gut metagenome; faeces
41582
41656
+
Gln
TTG
[ENA]
¢þ
>WENV182908107
OKTF01010255
[OKTF] human gut metagenome; feces
1370
1296
-
Gln
TTG
[ENA]
¢þ
>WENV183290363
OLSH01000189
[OLSH] human gut metagenome; faeces
7913
7839
-
Gln
TTG
[ENA]
¢þ
>WENV183290377
OLSH01000206
[OLSH] human gut metagenome; faeces
19310
19236
-
Gln
TTG
[ENA]
¢þ
>WENV183760815
PPYE01238732
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1829
1755
-
Gln
TTG
[ENA]
¢þ
>WENV183764042
PPYE01312384
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
3925
3999
+
Gln
TTG
[ENA]
¢þ
>WENV183780506
PPYF01171810
[PPYF] human gut metagenome; stool from patient with Crohn's disease
20208
20282
+
Gln
TTG
[ENA]
¢þ
>WENV183780549
PPYF01172064
[PPYF] human gut metagenome; stool from patient with Crohn's disease
10319
10245
-
Gln
TTG
[ENA]
¢þ
>C181003921
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
1970390
1970464
+
Gln
TTG
-
¡û
>C181003922
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
3943950
3943876
-
Gln
TTG
-
¡û
>C181160980
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
1044424
1044498
+
Gln
TTG
-
¡û
>C181161005
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
2784605
2784679
+
Gln
TTG
-
¡û
>C181161037
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
1381275
1381349
+
Gln
TTG
-
¡û
>C181161068
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
2953282
2953208
-
Gln
TTG
-
¡û
>C181216761
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
3369332
3369406
+
Gln
TTG
-
¡û
>C181216793
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
1402250
1402176
-
Gln
TTG
-
¡û
>C191210225
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
3085903
3085829
-
Gln
TTG
-
¡û
>C191210250
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
1346299
1346225
-
Gln
TTG
-
¡û
>C191219257
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
1397666
1397740
+
Gln
TTG
-
¡û
>C191219264
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
3330018
3330092
+
Gln
TTG
-
¡û
>W09118787
ACDH01000050
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
5984
5910
-
Gln
TTG
[ENA]
¡û
>W09118801
ACDH01000070
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
8041
7967
-
Gln
TTG
[ENA]
¡û
>W09125172
ACIE01000036
Fusobacteriota
Fusobacterium varium ATCC 27725 [ACIE]
20407
20333
-
Gln
TTG
[ENA]
¡û
>W09125200
ACIE01000097
Fusobacteriota
Fusobacterium varium ATCC 27725 [ACIE]
38784
38858
+
Gln
TTG
[ENA]
¡û
>W1810791342
QRIG01000008
Fusobacteriota
Fusobacterium varium AM22-17 [QRIG]
83374
83300
-
Gln
TTG
[ENA]
¡û
>W1810818375
QSDE01000001
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
70266
70192
-
Gln
TTG
[ENA]
¡û
>W1810818382
QSDE01000010
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
84552
84626
+
Gln
TTG
[ENA]
¡û
>W1810832209
QSOW01000002
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
14845
14771
-
Gln
TTG
[ENA]
¡û
>W1810832214
QSOW01000009
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
26556
26482
-
Gln
TTG
[ENA]
¡û
>C11111510
CP002281
Fusobacteriota
Ilyobacter polytropus DSM 2926 [CP002281]
2033470
2033396
-
Gln
TTG
[Ensembl]
¡û
>W121021732
AGWJ01000017
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
33293
33367
+
Gln
TTG
[ENA]
¡û
>W121021765
AGWJ01000056
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
12781
12707
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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