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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fusobacteria
Anticodon = TTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.597206 (5 seq.)
>PL171000413
CP002282
Fusobacteria
Ilyobacter polytropus DSM 2926 plasmid:pILYOP01
81935
82010
+
Lys
TTT
[ENA]
¡û
>PL171000431
CP002282
Fusobacteria
Ilyobacter polytropus DSM 2926 plasmid:pILYOP01
942933
942858
-
Lys
TTT
[ENA]
¡û
>PL171000433
CP002282
Fusobacteria
Ilyobacter polytropus DSM 2926 plasmid:pILYOP01
920184
920109
-
Lys
TTT
[ENA]
¡û
>C11111506
CP002281
Fusobacteriota
Ilyobacter polytropus DSM 2926 [CP002281]
40088
40163
+
Lys
TTT
[Ensembl]
¡û
>C11111514
CP002281
Fusobacteriota
Ilyobacter polytropus DSM 2926 [CP002281]
2010403
2010328
-
Lys
TTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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