This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gammaproteobacteria
Anticodon = AAT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73341 (23 seq.)
>W1711609406
MOSU01000543
Gammaproteobacteria
Klebsiella variicola [MOSU]
234
149
-
Ile
AAT
[ENA]
¡û
>W1712054987
NFYB01000041
Gammaproteobacteria
Klebsiella pneumoniae [NFYB]
2672
2757
+
Ile
AAT
[ENA]
¡û
>W1712080123
NGZG01000073
Gammaproteobacteria
Klebsiella variicola [NGZG]
1924
1839
-
Ile
AAT
[ENA]
¡û
>W1712096537
NHZM01000004
Gammaproteobacteria
Klebsiella pneumoniae [NHZM]
859
774
-
Ile
AAT
[ENA]
¡û
>WENV180401838
OBRN01004022
[OBRN] human gut metagenome; ENVO:feces
1207
1293
+
Ile
AAT
[ENA]
¢þ
>WENV181583375
OGKD01001756
[OGKD] metagenome; Human gut stool
8808
8722
-
Ile
AAT
[ENA]
¢þ
>W141184191
AYIZ01000026
Gammaproteobacteria
Klebsiella pneumoniae MGH 36 [AYIZ]
2656
2741
+
Ile
AAT
[ENA]
¡û
>W141255213
CBTW010000060
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae SA1 [CBTW]
121
36
-
Ile
AAT
[ENA]
¡û
>PL191000696
CP028552
Gammaproteobacteria
Klebsiella variicola WCHKP19 plasmid:p4_020019 (CP028552)
2791
2877
+
Ile
AAT
[ENA]
¡û
>PL191000921
CP031797
Gammaproteobacteria
Klebsiella pneumoniae INF125-sc-2279943 plasmid:unnamed2 (CP031797)
819
905
+
Ile
AAT
[ENA]
¡û
>PL191000925
CP031853
Gammaproteobacteria
Klebsiella pneumoniae 121 plasmid:pKP121-4 (CP031853)
2895
2809
-
Ile
AAT
[ENA]
¡û
>W141523494
JGYH01000010
Gammaproteobacteria
Klebsiella pneumoniae [JGYH]
2498
2583
+
Ile
AAT
[ENA]
¡û
>W1910150916
BIKC01000048
Gammaproteobacteria
Klebsiella variicola TUM14103 [BIKC]
3446
3532
+
Ile
AAT
[ENA]
¡û
>W1910869506
NCQG01000008
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn132 [NCQG]
1881
1967
+
Ile
AAT
[ENA]
¡û
>W1911550394
OVEI01000047
Gammaproteobacteria
Klebsiella pneumoniae KCRI-79C [OVEI]
219
133
-
Ile
AAT
[ENA]
¡û
>W1810370200
PWAT01000066
Gammaproteobacteria
Klebsiella variicola SCKV020069 [PWAT]
3471
3557
+
Ile
AAT
[ENA]
¡û
>W1810370360
PWAV01000064
Gammaproteobacteria
Klebsiella variicola SCKV020062 [PWAV]
2665
2579
-
Ile
AAT
[ENA]
¡û
>W1810535907
QDDX01000071
Gammaproteobacteria
Klebsiella pneumoniae H3 [QDDX]
1687
1773
+
Ile
AAT
[ENA]
¡û
>W1510034878
CCGJ01000044
Gammaproteobacteria
Klebsiella pneumoniae [CCGJ]
4223
4138
-
Ile
AAT
[ENA]
¡û
>W1510036726
CCHG01000248
Gammaproteobacteria
Klebsiella pneumoniae [CCHG]
7659
7574
-
Ile
AAT
[ENA]
¡û
>W1511669210
LEXX01000023
Gammaproteobacteria
Klebsiella pneumoniae CHS174 [LEXX]
492
407
-
Ile
AAT
[ENA]
¡û
>W1610483368
FLAM01000038
Gammaproteobacteria
Klebsiella pneumoniae k1296 [FLAM]
3386
3471
+
Ile
AAT
[ENA]
¡û
>W1710692912
JZXH01000110
Gammaproteobacteria
Escherichia coli [JZXH]
2852
2937
+
Ile
AAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK