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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gammaproteobacteria
Anticodon = AGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485832 (7 seq.)
>W131203045
ASXS01000017
Gammaproteobacteria
Vibrio fluvialis PG41 [ASXS]
138567
138492
-
Thr
AGT
[ENA]
¡û
>W1711500654
MKQZ01000009
Gammaproteobacteria
Vibrio parahaemolyticus [MKQZ]
1481
1556
+
Thr
AGT
[ENA]
¡û
>PL171001159
CP015514
Gammaproteobacteria
Vibrio vulnificus FORC_036 plasmid:unnamed
646715
646640
-
Thr
AGT
[ENA]
¡û
>C191015901
CP019292
Gammaproteobacteria
Vibrio vulnificus FORC_053 [CP019290, CP019291, CP019292]
445142
445217
+
Thr
AGT
-
¡û
>W1910792612
MRBW01000037
Gammaproteobacteria
Vibrio parahaemolyticus 229 [MRBW]
164
239
+
Thr
AGT
[ENA]
¡û
>W1911799883
QYSR01000002
Gammaproteobacteria
Vibrio parahaemolyticus Vp26 [QYSR]
652165
652090
-
Thr
AGT
[ENA]
¡û
>W1511541526
JZEQ01000012
Gammaproteobacteria
Vibrio vulnificus SC9729 [JZEQ]
212203
212128
-
Thr
AGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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