This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Gammaproteobacteria
Anticodon = CTT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.73042 (98 seq.)
>W1711590026
MOER01000044
Gammaproteobacteria
Escherichia coli [MOER]
3910
3998
+
Lys
CTT
[ENA]
¡û
>W1711590178
MOET01000042
Gammaproteobacteria
Escherichia coli [MOET]
1398
1310
-
Lys
CTT
[ENA]
¡û
>W1711590270
MOEU01000050
Gammaproteobacteria
Escherichia coli [MOEU]
1564
1652
+
Lys
CTT
[ENA]
¡û
>W1711590336
MOEV01000056
Gammaproteobacteria
Escherichia coli [MOEV]
2331
2243
-
Lys
CTT
[ENA]
¡û
>W1711590418
MOEW01000060
Gammaproteobacteria
Escherichia coli [MOEW]
3986
4074
+
Lys
CTT
[ENA]
¡û
>W1711590571
MOEY01000161
Gammaproteobacteria
Escherichia coli [MOEY]
453
365
-
Lys
CTT
[ENA]
¡û
>W1711590723
MOFA01000127
Gammaproteobacteria
Escherichia coli [MOFA]
414
326
-
Lys
CTT
[ENA]
¡û
>W1711590758
MOFB01000019
Gammaproteobacteria
Escherichia coli [MOFB]
1234
1146
-
Lys
CTT
[ENA]
¡û
>W1711590864
MOFC01000064
Gammaproteobacteria
Escherichia coli [MOFC]
615
527
-
Lys
CTT
[ENA]
¡û
>W1711591463
MOFK01000096
Gammaproteobacteria
Escherichia coli [MOFK]
435
347
-
Lys
CTT
[ENA]
¡û
>W1711591604
MOFM01000103
Gammaproteobacteria
Escherichia coli [MOFM]
2642
2730
+
Lys
CTT
[ENA]
¡û
>W1711591832
MOFP01000058
Gammaproteobacteria
Escherichia coli [MOFP]
3373
3285
-
Lys
CTT
[ENA]
¡û
>W1711592390
MOFX01000022
Gammaproteobacteria
Escherichia coli [MOFX]
1189
1101
-
Lys
CTT
[ENA]
¡û
>W1711592626
MOGA01000035
Gammaproteobacteria
Escherichia coli [MOGA]
5615
5703
+
Lys
CTT
[ENA]
¡û
>W1711592878
MOGD01000123
Gammaproteobacteria
Escherichia coli [MOGD]
544
632
+
Lys
CTT
[ENA]
¡û
>W1711593236
MOGI01000055
Gammaproteobacteria
Escherichia coli [MOGI]
3276
3188
-
Lys
CTT
[ENA]
¡û
>W1711593279
MOGJ01000022
Gammaproteobacteria
Escherichia coli [MOGJ]
2809
2721
-
Lys
CTT
[ENA]
¡û
>W1711593359
MOGK01000019
Gammaproteobacteria
Escherichia coli [MOGK]
1321
1233
-
Lys
CTT
[ENA]
¡û
>W1711593475
MOGL01000135
Gammaproteobacteria
Escherichia coli [MOGL]
434
346
-
Lys
CTT
[ENA]
¡û
>W1711593490
MOGM01000014
Gammaproteobacteria
Escherichia coli [MOGM]
5626
5714
+
Lys
CTT
[ENA]
¡û
>W1711593695
MOGO01000161
Gammaproteobacteria
Escherichia coli [MOGO]
159
71
-
Lys
CTT
[ENA]
¡û
>W1711593745
MOGP01000032
Gammaproteobacteria
Escherichia coli [MOGP]
5112
5200
+
Lys
CTT
[ENA]
¡û
>W1711593837
MOGQ01000071
Gammaproteobacteria
Escherichia coli [MOGQ]
3221
3133
-
Lys
CTT
[ENA]
¡û
>W1711593846
MOGR01000002
Gammaproteobacteria
Escherichia coli [MOGR]
4808
4896
+
Lys
CTT
[ENA]
¡û
>W1711593970
MOGS01000035
Gammaproteobacteria
Escherichia coli [MOGS]
1434
1522
+
Lys
CTT
[ENA]
¡û
>W1711594262
MOGW01000032
Gammaproteobacteria
Escherichia coli [MOGW]
5400
5488
+
Lys
CTT
[ENA]
¡û
>W1711594445
MOGY01000074
Gammaproteobacteria
Escherichia coli [MOGY]
1911
1823
-
Lys
CTT
[ENA]
¡û
>W1711594491
MOGZ01000036
Gammaproteobacteria
Escherichia coli [MOGZ]
379
291
-
Lys
CTT
[ENA]
¡û
>W1711594730
MOHC01000057
Gammaproteobacteria
Escherichia coli [MOHC]
4490
4402
-
Lys
CTT
[ENA]
¡û
>W1711595441
MOHM01000027
Gammaproteobacteria
Escherichia coli [MOHM]
3149
3061
-
Lys
CTT
[ENA]
¡û
>W1711595607
MOHO01000030
Gammaproteobacteria
Escherichia coli [MOHO]
440
352
-
Lys
CTT
[ENA]
¡û
>W1711595770
MOHQ01000072
Gammaproteobacteria
Escherichia coli [MOHQ]
1297
1385
+
Lys
CTT
[ENA]
¡û
>W1711595910
MOHS01000072
Gammaproteobacteria
Escherichia coli [MOHS]
5288
5200
-
Lys
CTT
[ENA]
¡û
>W1711595955
MOHT01000019
Gammaproteobacteria
Escherichia coli [MOHT]
3713
3625
-
Lys
CTT
[ENA]
¡û
>W1711596344
MOHY01000045
Gammaproteobacteria
Escherichia coli [MOHY]
1707
1795
+
Lys
CTT
[ENA]
¡û
>W1711596856
MOIF01000080
Gammaproteobacteria
Escherichia coli [MOIF]
4055
4143
+
Lys
CTT
[ENA]
¡û
>W1711596936
MOIG01000099
Gammaproteobacteria
Escherichia coli [MOIG]
5219
5307
+
Lys
CTT
[ENA]
¡û
>W1711597237
MOIK01000202
Gammaproteobacteria
Escherichia coli [MOIK]
653
565
-
Lys
CTT
[ENA]
¡û
>W1711598050
MOIV01000124
Gammaproteobacteria
Escherichia coli [MOIV]
456
368
-
Lys
CTT
[ENA]
¡û
>W1711598124
MOIW01000124
Gammaproteobacteria
Escherichia coli [MOIW]
456
368
-
Lys
CTT
[ENA]
¡û
>W1711598257
MOIY01000049
Gammaproteobacteria
Escherichia coli [MOIY]
3971
3883
-
Lys
CTT
[ENA]
¡û
>W1711598572
MOJC01000176
Gammaproteobacteria
Escherichia coli [MOJC]
350
438
+
Lys
CTT
[ENA]
¡û
>W1711598920
MOJH01000060
Gammaproteobacteria
Escherichia coli [MOJH]
4440
4528
+
Lys
CTT
[ENA]
¡û
>W1711599005
MOJI01000069
Gammaproteobacteria
Escherichia coli [MOJI]
5165
5253
+
Lys
CTT
[ENA]
¡û
>W1711599143
MOJK01000060
Gammaproteobacteria
Escherichia coli [MOJK]
483
395
-
Lys
CTT
[ENA]
¡û
>W1711599230
MOJL01000060
Gammaproteobacteria
Escherichia coli [MOJL]
927
839
-
Lys
CTT
[ENA]
¡û
>W1711599520
MOJP01000086
Gammaproteobacteria
Escherichia coli [MOJP]
3681
3769
+
Lys
CTT
[ENA]
¡û
>W1711600940
MOKJ01000041
Gammaproteobacteria
Escherichia coli [MOKJ]
5329
5417
+
Lys
CTT
[ENA]
¡û
>W1711601045
MOKK01000116
Gammaproteobacteria
Escherichia coli [MOKK]
731
819
+
Lys
CTT
[ENA]
¡û
>W1711601074
MOKL01000015
Gammaproteobacteria
Escherichia coli [MOKL]
553
465
-
Lys
CTT
[ENA]
¡û
>W1711601331
MOKO01000064
Gammaproteobacteria
Escherichia coli [MOKO]
253
341
+
Lys
CTT
[ENA]
¡û
>W1711601642
MOKS01000059
Gammaproteobacteria
Escherichia coli [MOKS]
4440
4352
-
Lys
CTT
[ENA]
¡û
>W1711601999
MOKX01000036
Gammaproteobacteria
Escherichia coli [MOKX]
965
877
-
Lys
CTT
[ENA]
¡û
>W1711602160
MOKZ01000024
Gammaproteobacteria
Escherichia coli [MOKZ]
5348
5260
-
Lys
CTT
[ENA]
¡û
>W1711602517
MOLE01000047
Gammaproteobacteria
Escherichia coli [MOLE]
892
804
-
Lys
CTT
[ENA]
¡û
>W1711836926
MXVU01000052
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Muenster [MXVU]
2571
2659
+
Lys
CTT
[ENA]
¡û
>W1711845532
MYBA01000220
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Muenchen [MYBA]
369
281
-
Lys
CTT
[ENA]
¡û
>W1711894555
MZBX01000245
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Indiana [MZBX]
492
404
-
Lys
CTT
[ENA]
¡û
>W1711916156
MZVX01000011
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Enteritidis [MZVX]
915
1003
+
Lys
CTT
[ENA]
¡û
>W1711916224
MZVY01000025
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Enteritidis [MZVY]
5007
5095
+
Lys
CTT
[ENA]
¡û
>W1712078230
NGVG01000069
Gammaproteobacteria
Escherichia coli [NGVG]
5132
5220
+
Lys
CTT
[ENA]
¡û
>W141112163
AVSZ01000068
Gammaproteobacteria
Escherichia coli HVH 3 (4-7276001) [AVSZ]
4267
4355
+
Lys
CTT
[ENA]
¡û
>W141123575
AVYO01000032
Gammaproteobacteria
Escherichia coli HVH 188 (4-2356988) [AVYO]
559
471
-
Lys
CTT
[ENA]
¡û
>WENV181637317
OGNB01004073
[OGNB] metagenome; Human gut stool
687
599
-
Lys
CTT
[ENA]
¢þ
>WENV181957170
OGZL01003318
[OGZL] human gut metagenome; faeces
7714
7802
+
Lys
CTT
[ENA]
¢þ
>WENV182172543
OHMY01014725
[OHMY] human gut metagenome; feces
534
622
+
Lys
CTT
[ENA]
¢þ
>PL191001145
CP032883
Gammaproteobacteria
Escherichia coli SCEC020022 plasmid:p4_020022 (CP032883)
5354
5442
+
Lys
CTT
[ENA]
¡û
>W1910096613
BFVA01000377
Gammaproteobacteria
Escherichia coli JML280 [BFVA]
938
850
-
Lys
CTT
[ENA]
¡û
>W1910209260
FLYS01000077
Gammaproteobacteria
Escherichia coli [FLYS]
482
394
-
Lys
CTT
[ENA]
¡û
>W1910209945
FLZA01000081
Gammaproteobacteria
Escherichia coli [FLZA]
1929
2017
+
Lys
CTT
[ENA]
¡û
>W1910210635
FLZI01000110
Gammaproteobacteria
Escherichia coli [FLZI]
491
403
-
Lys
CTT
[ENA]
¡û
>W1910210992
FLZM01000205
Gammaproteobacteria
Escherichia coli [FLZM]
162
250
+
Lys
CTT
[ENA]
¡û
>W1910853893
NBKE01000086
Gammaproteobacteria
Escherichia coli Spr2012_WWKa_OUT_54 [NBKE]
440
352
-
Lys
CTT
[ENA]
¡û
>W1911108388
NOEX01000067
Gammaproteobacteria
Escherichia coli MOD1-EC5280 [NOEX]
527
439
-
Lys
CTT
[ENA]
¡û
>W1911189366
NQVL01000047
Gammaproteobacteria
Klebsiella pneumoniae WCHKP1931 [NQVL]
4066
4154
+
Lys
CTT
[ENA]
¡û
>W1911189439
NQVM01000039
Gammaproteobacteria
Klebsiella pneumoniae WCHKP1929 [NQVM]
1163
1075
-
Lys
CTT
[ENA]
¡û
>W1911224166
NRVG01000086
Gammaproteobacteria
Escherichia coli A190 [NRVG]
513
425
-
Lys
CTT
[ENA]
¡û
>W1911225936
NRWF01000169
Gammaproteobacteria
Escherichia coli A429 [NRWF]
4672
4760
+
Lys
CTT
[ENA]
¡û
>W1911648646
QATA01000027
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Stanley sg_wt13 [QATA]
2861
2949
+
Lys
CTT
[ENA]
¡û
>W1911651644
QAUN01000006
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Brancaster sg_t24 [QAUN]
2821
2733
-
Lys
CTT
[ENA]
¡û
>W1911667540
QFLN01000624
Gammaproteobacteria
Enterobacter cloacae complex sp. 743-2DZ2F-22B [QFLN]
300
212
-
Lys
CTT
[ENA]
¡û
>W1911668665
QFMC01000209
Gammaproteobacteria
Klebsiella pneumoniae DZ2-21B [QFMC]
2952
3040
+
Lys
CTT
[ENA]
¡û
>W1911668908
QFMF01000899
Gammaproteobacteria
Klebsiella pneumoniae 775-DZ2-4B [QFMF]
119
31
-
Lys
CTT
[ENA]
¡û
>W1911669213
QFMJ01000169
Gammaproteobacteria
Klebsiella pneumoniae DZ2-13B1 [QFMJ]
5593
5505
-
Lys
CTT
[ENA]
¡û
>W1911670226
QFRF01000037
Gammaproteobacteria
Klebsiella pneumoniae 737-2DZ2-29W [QFRF]
5175
5087
-
Lys
CTT
[ENA]
¡û
>W1810094437
PGIV01000058
Gammaproteobacteria
Escherichia coli 12c8 [PGIV]
3468
3556
+
Lys
CTT
[ENA]
¡û
>W1810095487
PGJI01000059
Gammaproteobacteria
Escherichia coli 12c7 [PGJI]
4738
4826
+
Lys
CTT
[ENA]
¡û
>W1810095568
PGJJ01000045
Gammaproteobacteria
Escherichia coli Ehw1-5f [PGJJ]
4732
4820
+
Lys
CTT
[ENA]
¡û
>W1810096482
PGJU01000147
Gammaproteobacteria
Escherichia coli GZC12-13 [PGJU]
2438
2526
+
Lys
CTT
[ENA]
¡û
>W1810097453
PGKG01000076
Gammaproteobacteria
Escherichia coli 8·î2Æü [PGKG]
532
444
-
Lys
CTT
[ENA]
¡û
>W1810100379
PGLP01000056
Gammaproteobacteria
Escherichia coli LCD33 [PGLP]
1274
1186
-
Lys
CTT
[ENA]
¡û
>W1810177399
PJRM01000061
Gammaproteobacteria
Escherichia coli 12c5 [PJRM]
2744
2656
-
Lys
CTT
[ENA]
¡û
>W1810250725
PQDJ01000004
Gammaproteobacteria
Escherichia coli RDP19 [PQDJ]
4940
5028
+
Lys
CTT
[ENA]
¡û
>W1810584979
QFBV01000117
Gammaproteobacteria
Acinetobacter baumannii SH40 [QFBV]
153
241
+
Lys
CTT
[ENA]
¡û
>W1810585241
QFCA01000208
Gammaproteobacteria
Acinetobacter baumannii JX214 [QFCA]
327
239
-
Lys
CTT
[ENA]
¡û
>W1511436777
JUJZ01000035
Gammaproteobacteria
Escherichia coli EC13 [JUJZ]
430
342
-
Lys
CTT
[ENA]
¡û
>W1511482041
JWKF01000073
Gammaproteobacteria
Escherichia coli EC5 [JWKF]
2330
2418
+
Lys
CTT
[ENA]
¡û
>W1511482122
JWKG01000106
Gammaproteobacteria
Escherichia coli EC7 [JWKG]
697
609
-
Lys
CTT
[ENA]
¡û
Identical group No.76422 (10 seq.)
>W1711070305
LSGD01000018
Gammaproteobacteria
Escherichia coli [LSGD]
8393
8305
-
Lys
CTT
[ENA]
¡û
>W1711070453
LSGE01000155
Gammaproteobacteria
Escherichia coli [LSGE]
3253
3165
-
Lys
CTT
[ENA]
¡û
>W1711070477
LSGF01000001
Gammaproteobacteria
Escherichia coli [LSGF]
481
393
-
Lys
CTT
[ENA]
¡û
>PL171000782
CP010188
Gammaproteobacteria
Escherichia coli M6 plasmid:B
3849
3761
-
Lys
CTT
[ENA]
¡û
>PL171000783
CP010199
Gammaproteobacteria
Escherichia coli M9 plasmid:C
1056
968
-
Lys
CTT
[ENA]
¡û
>PL171000785
CP010211
Gammaproteobacteria
Escherichia coli M11 plasmid:E
5518
5606
+
Lys
CTT
[ENA]
¡û
>PL171000786
CP010216
Gammaproteobacteria
Escherichia coli M15 plasmid:C
1026
1114
+
Lys
CTT
[ENA]
¡û
>PL171000787
CP010224
Gammaproteobacteria
Escherichia coli M19 plasmid:C
968
880
-
Lys
CTT
[ENA]
¡û
>W1910951807
NJMZ01000168
Gammaproteobacteria
Escherichia coli MOD1-EC269 [NJMZ]
3040
2952
-
Lys
CTT
[ENA]
¡û
>W1911109877
NOFS01000089
Gammaproteobacteria
Escherichia coli MOD1-EC5162 [NOFS]
945
857
-
Lys
CTT
[ENA]
¡û
Identical group No.349756 (1 seq.)
>PL171001678
CP022662
Gammaproteobacteria
Salmonella enterica subsp. enterica RM11065 plasmid:pRM11065-2
216
293
+
Lys
CTT
[ENA]
¡û
Identical group No.549129 (3 seq.)
>W1710871705
LMLL01000011
Gammaproteobacteria
Pseudomonas sp. Leaf58 [LMLL]
216464
216389
-
Lys
CTT
[ENA]
¡û
>PL191001102
CP032678
Gammaproteobacteria
Pseudomonas sp. Leaf58 plasmid:pBASL58 (CP032678)
702811
702886
+
Lys
CTT
[ENA]
¡û
>W1610734051
LMLL01000011
Gammaproteobacteria
Pseudomonas sp. Leaf58 [LMLL]
216464
216389
-
Lys
CTT
[ENA]
¡û
Identical group No.551821 (1 seq.)
>PL171001865
LN999834
Gammaproteobacteria
Candidatus Doolittlea endobia plasmid:II
9427
9352
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK