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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = GAA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.428296 (1 seq.)
>PHG181000874
KP339049
Herelleviridae
Enterococcus phage EFDG1 (KP339049)
51519
51446
-
Phe
GAA
[ENA]
¡û
Identical group No.452529 (41 seq.)
>PHG0100228
AY176327
Myoviridae
Staphylococcus virus K PaP3 (AY176327)
30520
30448
-
Phe
GAA
[ENA]
¡û
>PHG0100344
AY954969
Myoviridae
Staphylococcus virus G1 phi812b (AY954969)
134020
133948
-
Phe
GAA
[ENA]
¡û
>PHG181000059
AP018375
Herelleviridae
Staphylococcus phage phiSA039 (AP018375)
27253
27181
-
Phe
GAA
[ENA]
¡û
>PHG181000685
KJ206559
Herelleviridae
Staphylococcus phage 812 (KJ206559)
37767
37695
-
Phe
GAA
[ENA]
¡û
>PHG181000688
KJ206560
Herelleviridae
Staphylococcus phage 812 (KJ206560)
37802
37730
-
Phe
GAA
[ENA]
¡û
>PHG181000691
KJ206561
Herelleviridae
Staphylococcus phage 812 (KJ206561)
37734
37662
-
Phe
GAA
[ENA]
¡û
>PHG181000694
KJ206562
Herelleviridae
Staphylococcus phage 812 (KJ206562)
36280
36208
-
Phe
GAA
[ENA]
¡û
>PHG181000697
KJ206563
Herelleviridae
Staphylococcus phage 812 (KJ206563)
36293
36221
-
Phe
GAA
[ENA]
¡û
>PHG181000816
KP027446
Herelleviridae
Staphylococcus phage phiIPLA-RODI (KP027446)
30968
30896
-
Phe
GAA
[ENA]
¡û
>PHG181000979
KP687431
Herelleviridae
Staphylococcus phage IME-SA1 (KP687431)
10922
10850
-
Phe
GAA
[ENA]
¡û
>PHG181000981
KP687432
Herelleviridae
Staphylococcus phage IME-SA2 (KP687432)
29265
29193
-
Phe
GAA
[ENA]
¡û
>PHG181001335
KR902361
Herelleviridae
Staphylococcus phage IME-SA118 (KR902361)
44016
43944
-
Phe
GAA
[ENA]
¡û
>PHG181001339
KR908644
Herelleviridae
Staphylococcus phage IME-SA119 (KR908644)
7709
7781
+
Phe
GAA
[ENA]
¡û
>PHG181004192
KY581279
Herelleviridae
Staphylococcus phage pSa-3 (KY581279)
34970
34898
-
Phe
GAA
[ENA]
¡û
>PHG181004347
KY779849
Herelleviridae
Staphylococcus phage qdsa002 (KY779849)
41289
41217
-
Phe
GAA
[ENA]
¡û
>PHG181004866
MF001365
Herelleviridae
Staphylococcus phage SA3 (MF001365)
10765
10693
-
Phe
GAA
[ENA]
¡û
>PHG181005569
MF398190
Herelleviridae
Staphylococcus phage vB_SauM-fRuSau02 (MF398190)
38118
38046
-
Phe
GAA
[ENA]
¡û
>PHG181005617
MF405094
Herelleviridae
Staphylococcus phage JA1 Staphylococcus aureus CIT281189 (MF405094)
37692
37620
-
Phe
GAA
[ENA]
¡û
>PHG181007059
MG656408
Herelleviridae
Staphylococcus phage B1 Staphylococcus aureus DPC5246 (MG656408)
38119
38047
-
Phe
GAA
[ENA]
¡û
>PHG181007184
MG721208
Herelleviridae
Staphylococcus phage vB_SauM_LM12 (MG721208)
108936
109008
+
Phe
GAA
[ENA]
¡û
>PHG181007788
MH107769
Herelleviridae
Staphylococcus phage vB_SauM_0414_108 (MH107769)
37508
37436
-
Phe
GAA
[ENA]
¡û
>PHG181007791
MH136584
Herelleviridae
Staphylococcus phage HYZ21 (MH136584)
28583
28511
-
Phe
GAA
[ENA]
¡û
>PHG14100014
AB853330
Myoviridae
Staphylococcus phage S25-3 (AB853330)
35814
35742
-
Phe
GAA
[ENA]
¡û
>PHG14100017
AB853331
Myoviridae
Staphylococcus phage S25-4 (AB853331)
40681
40609
-
Phe
GAA
[ENA]
¡û
>PHG14100019
AB903967
Myoviridae
Staphylococcus phage phiSA12 phiSA012 (AB903967)
30416
30344
-
Phe
GAA
[ENA]
¡û
>PHG14100049
EU418428
Myoviridae
Staphylococcus phage A5W PAS39 (EU418428)
37570
37498
-
Phe
GAA
[ENA]
¡û
>PHG14100191
FR852584
Myoviridae
Staphylococcus phage ISP ATCC 35860-B1 (FR852584)
134024
133952
-
Phe
GAA
[ENA]
¡û
>PHG14100580
HQ163896
Myoviridae
Staphylococcus phage Sb-1 Aabphi01 (HQ163896)
30499
30427
-
Phe
GAA
[ENA]
¡û
>PHG14101508
JQ686190
Myoviridae
Staphylococcus phage GH15 DEC5E (JQ686190)
37921
37849
-
Phe
GAA
[ENA]
¡û
>PHG14101617
JX080300
Myoviridae
Staphylococcus phage Staph1N Lu11 (JX080300)
37567
37495
-
Phe
GAA
[ENA]
¡û
>PHG14101620
JX080301
Myoviridae
Staphylococcus phage A3R Lu11 (JX080301)
37442
37370
-
Phe
GAA
[ENA]
¡û
>PHG14101623
JX080302
Myoviridae
Staphylococcus phage 676Z Lu11 (JX080302)
38489
38417
-
Phe
GAA
[ENA]
¡û
>PHG14101626
JX080303
Myoviridae
Staphylococcus phage Fi200W Lu11 (JX080303)
38445
38373
-
Phe
GAA
[ENA]
¡û
>PHG14101629
JX080304
Myoviridae
Staphylococcus phage MSA6 Lu11 (JX080304)
38087
38015
-
Phe
GAA
[ENA]
¡û
>PHG14101632
JX080305
Myoviridae
Staphylococcus phage P4W Lu11 (JX080305)
37547
37475
-
Phe
GAA
[ENA]
¡û
>PHG14101981
JX875065
Myoviridae
Staphylococcus phage SA5 Pseudomonas putida GB-1 (JX875065)
33619
33691
+
Phe
GAA
[ENA]
¡û
>PHG14101985
JX878671
Myoviridae
Staphylococcus phage JD007 Pseudomonas putida GB-1 (JX878671)
50424
50496
+
Phe
GAA
[ENA]
¡û
>PHG14101999
KC012913
Myoviridae
Staphylococcus phage Team1 TN106 (KC012913)
38104
38032
-
Phe
GAA
[ENA]
¡û
>PHG14102635
KF766114
Myoviridae
Staphylococcus virus K Klebsiella pneumoniae (KF766114)
37598
37526
-
Phe
GAA
[ENA]
¡û
>PHG14103034
KJ888149
Myoviridae
Staphylococcus phage MCE-2014 IB4755 (KJ888149)
38865
38793
-
Phe
GAA
[ENA]
¡û
>PHG14103065
KM216423
Myoviridae
Staphylococcus phage P108 LIKBL0011 (KM216423)
116744
116672
-
Phe
GAA
[ENA]
¡û
Identical group No.480719 (1 seq.)
>PHG181004389
KY794641
Herelleviridae
Staphylococcus phage vB_Sau_CG (KY794641)
138606
138534
-
Phe
GAA
[ENA]
¡û
Identical group No.523504 (4 seq.)
>PHG181001427
KT187252
Herelleviridae
Bacillus phage PBC6 (KT187252)
725
650
-
Phe
GAA
[ENA]
¡û
>PHG181001448
KT224359
Herelleviridae
Bacillus phage TsarBomba (KT224359)
28369
28444
+
Phe
GAA
[ENA]
¡û
>PHG181003722
KX987999
Herelleviridae
Bacillus phage BCP12 (KX987999)
125867
125792
-
Phe
GAA
[ENA]
¡û
>PHG14101342
JN797797
Myoviridae
Bacillus phage BCP78 Bongo (JN797797)
814
739
-
Phe
GAA
[ENA]
¡û
Identical group No.672105 (14 seq.)
>PHG0100387
DQ003638
Myoviridae
Listeria virus A511 T4dC-46 (DQ003638)
29319
29248
-
Phe
GAA
[ENA]
¡û
>PHG181001510
KT319598
Myoviridae
Listeria phage WIL-2 (KT319598)
2436
2507
+
Phe
GAA
[ENA]
¡û
>PHG181001524
KT319610
Herelleviridae
Listeria phage WIL-3 (KT319610)
2357
2428
+
Phe
GAA
[ENA]
¡û
>PHG14101788
JX126918
Myoviridae
Listeria phage LP-125 Lu11 (JX126918)
38779
38708
-
Phe
GAA
[ENA]
¡û
>PHG14102706
KJ094029
Myoviridae
Listeria phage LP-064 RIP1 (KJ094029)
38780
38709
-
Phe
GAA
[ENA]
¡û
>PHG14102722
KJ094030
Myoviridae
Listeria phage LP-083-2 RIP1 (KJ094030)
35446
35375
-
Phe
GAA
[ENA]
¡û
>PHG14102738
KJ094031
Myoviridae
Listeria phage LP-124 RIP1 (KJ094031)
133331
133260
-
Phe
GAA
[ENA]
¡û
>PHG14102755
KJ094033
Myoviridae
Listeria phage LP-048 RIP1 (KJ094033)
31307
31236
-
Phe
GAA
[ENA]
¡û
>PHG14102921
KJ535722
Myoviridae
Listeria phage LMSP-25 (KJ535722)
44801
44730
-
Phe
GAA
[ENA]
¡û
>PHG14102939
KJ586794
Myoviridae
Listeria phage LMTA-34 LMSP-25 (KJ586794)
44801
44730
-
Phe
GAA
[ENA]
¡û
>PHG14102952
KJ586795
Myoviridae
Listeria phage LMTA-94 LMSP-25 (KJ586795)
102527
102598
+
Phe
GAA
[ENA]
¡û
>PHG14102974
KJ591605
Myoviridae
Listeria phage LMTA-57 LMSP-25 (KJ591605)
112919
112990
+
Phe
GAA
[ENA]
¡û
>PHG14103021
KJ668715
Myoviridae
Listeria phage LMTA-34 IB4755 (KJ668715)
89469
89540
+
Phe
GAA
[ENA]
¡û
>PHG14103137
KM373208
Myoviridae
Listeria phage WIL-1 81 (KM373208)
2724
2795
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK