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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = GCT
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.7549 (1 seq.)
>PHG181001415
KT187252
Herelleviridae
Bacillus phage PBC6 (KT187252)
2674
2581
-
Ser
GCT
[ENA]
¡û
Identical group No.22419 (2 seq.)
>PHG181000708
KJ676859
Herelleviridae
Bacillus phage JBP901 (KJ676859)
158907
158819
-
Ser
GCT
[ENA]
¡û
>PHG181003363
KX495186
Herelleviridae
Bacillus phage PK16 (KX495186)
157515
157427
-
Ser
GCT
[ENA]
¡û
Identical group No.28065 (2 seq.)
>PHG181001906
KT995480
Herelleviridae
Bacillus virus BM15 (KT995480)
29057
29145
+
Ser
GCT
[ENA]
¡û
>PHG14102823
KJ451625
Myoviridae
Bacillus phage Bcp1 TahiMoana (KJ451625)
30794
30882
+
Ser
GCT
[ENA]
¡û
Identical group No.28884 (2 seq.)
>WENV170560017
CYGL01000015
[CYGL] human gut metagenome;
48483
48575
+
Ser
GCT
[ENA]
¢þ
>PHG181000868
KP339049
Herelleviridae
Enterococcus phage EFDG1 (KP339049)
53660
53569
-
Ser
GCT
[ENA]
¡û
Identical group No.39637 (2 seq.)
>PHG181003955
KY368639
Herelleviridae
Bacillus phage vB_BsuM-Goe2 (KY368639)
28703
28792
+
Ser
GCT
[ENA]
¡û
>PHG14102616
KF669649
Myoviridae
Bacillus phage CampHawk PM6 (KF669649)
29189
29278
+
Ser
GCT
[ENA]
¡û
Identical group No.41178 (1 seq.)
>PHG181000670
KJ081346
Herelleviridae
Bacillus phage BCP8-2 (KJ081346)
36396
36309
-
Ser
GCT
[ENA]
¡û
Identical group No.43136 (1 seq.)
>PHG181002081
KU577463
Herelleviridae
Bacillus phage Deep Blue (KU577463)
142622
142532
-
Ser
GCT
[ENA]
¡û
Identical group No.49558 (6 seq.)
>PHG181002325
KU737346
Herelleviridae
Bacillus phage Vinny (KU737346)
34666
34752
+
Ser
GCT
[ENA]
¡û
>PHG181005169
MF288922
Herelleviridae
Bacillus phage Janet (MF288922)
34401
34487
+
Ser
GCT
[ENA]
¡û
>PHG181005962
MF498901
Herelleviridae
Bacillus phage Anthony (MF498901)
34667
34753
+
Ser
GCT
[ENA]
¡û
>PHG14102882
KJ489397
Myoviridae
Bacillus phage CAM003 GT7 (KJ489397)
34330
34416
+
Ser
GCT
[ENA]
¡û
>PHG14102889
KJ489398
Myoviridae
Bacillus phage Evoli GT7 (KJ489398)
34061
34147
+
Ser
GCT
[ENA]
¡û
>PHG14102896
KJ489400
Myoviridae
Bacillus phage Hoody T GT7 (KJ489400)
34151
34237
+
Ser
GCT
[ENA]
¡û
Identical group No.49559 (16 seq.)
>PHG0100379
DQ003638
Myoviridae
Listeria virus A511 T4dC-46 (DQ003638)
31344
31258
-
Ser
GCT
[ENA]
¡û
>PHG0100395
DQ004855
Myoviridae
Listeria virus P100 T4dC-46 (DQ004855)
129220
129134
-
Ser
GCT
[ENA]
¡û
>PHG181001503
KT319598
Myoviridae
Listeria phage WIL-2 (KT319598)
411
497
+
Ser
GCT
[ENA]
¡û
>PHG181001517
KT319610
Herelleviridae
Listeria phage WIL-3 (KT319610)
332
418
+
Ser
GCT
[ENA]
¡û
>PHG14101574
JQ797329
Myoviridae
Listeria phage vB_LmoM_AG20 Lu11 (JQ797329)
30700
30614
-
Ser
GCT
[ENA]
¡û
>PHG14101780
JX126918
Myoviridae
Listeria phage LP-125 Lu11 (JX126918)
40804
40718
-
Ser
GCT
[ENA]
¡û
>PHG14102698
KJ094029
Myoviridae
Listeria phage LP-064 RIP1 (KJ094029)
40805
40719
-
Ser
GCT
[ENA]
¡û
>PHG14102714
KJ094030
Myoviridae
Listeria phage LP-083-2 RIP1 (KJ094030)
37471
37385
-
Ser
GCT
[ENA]
¡û
>PHG14102730
KJ094031
Myoviridae
Listeria phage LP-124 RIP1 (KJ094031)
135356
135270
-
Ser
GCT
[ENA]
¡û
>PHG14102916
KJ535722
Myoviridae
Listeria phage LMSP-25 (KJ535722)
46705
46619
-
Ser
GCT
[ENA]
¡û
>PHG14102934
KJ586794
Myoviridae
Listeria phage LMTA-34 LMSP-25 (KJ586794)
46705
46619
-
Ser
GCT
[ENA]
¡û
>PHG14102947
KJ586795
Myoviridae
Listeria phage LMTA-94 LMSP-25 (KJ586795)
100610
100696
+
Ser
GCT
[ENA]
¡û
>PHG14102960
KJ591604
Myoviridae
Listeria phage LMTA-148 LMSP-25 (KJ591604)
38778
38692
-
Ser
GCT
[ENA]
¡û
>PHG14102969
KJ591605
Myoviridae
Listeria phage LMTA-57 LMSP-25 (KJ591605)
111015
111101
+
Ser
GCT
[ENA]
¡û
>PHG14103014
KJ668715
Myoviridae
Listeria phage LMTA-34 IB4755 (KJ668715)
87486
87572
+
Ser
GCT
[ENA]
¡û
>PHG14103129
KM373208
Myoviridae
Listeria phage WIL-1 81 (KM373208)
699
785
+
Ser
GCT
[ENA]
¡û
Identical group No.52372 (1 seq.)
>PHG181005163
MF288921
Herelleviridae
Bacillus phage OTooleKemple52 (MF288921)
33719
33806
+
Ser
GCT
[ENA]
¡û
Identical group No.52377 (1 seq.)
>PHG181008447
MH538296
Herelleviridae
Bacillus phage Maceta (MH538296)
42657
42571
-
Ser
GCT
[ENA]
¡û
Identical group No.55004 (3 seq.)
>PHG181005619
MF422185
Herelleviridae
Bacillus phage BSP10 (MF422185)
112094
112182
+
Ser
GCT
[ENA]
¡û
>PHG14100021
AB930182
Myoviridae
Bacillus phage SPG24 (AB930182)
108723
108811
+
Ser
GCT
[ENA]
¡û
>PHG14100044
AP013029
Myoviridae
Bacillus phage phiNIT1 (AP013029)
33425
33513
+
Ser
GCT
[ENA]
¡û
Identical group No.58100 (1 seq.)
>PHG181004752
LT960608
Herelleviridae
Bacillus phage SBSphiJ (LT960608)
42014
42102
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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