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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = GTT
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483816 (5 seq.)
>PHG181002319
KU737346
Herelleviridae
Bacillus phage Vinny (KU737346)
32383
32457
+
Asn
GTT
[ENA]
¡û
>PHG181008440
MH538296
Herelleviridae
Bacillus phage Maceta (MH538296)
44440
44366
-
Asn
GTT
[ENA]
¡û
>PHG14102876
KJ489397
Myoviridae
Bacillus phage CAM003 GT7 (KJ489397)
32547
32621
+
Asn
GTT
[ENA]
¡û
>PHG14102883
KJ489398
Myoviridae
Bacillus phage Evoli GT7 (KJ489398)
32278
32352
+
Asn
GTT
[ENA]
¡û
>PHG14102890
KJ489400
Myoviridae
Bacillus phage Hoody T GT7 (KJ489400)
32368
32442
+
Asn
GTT
[ENA]
¡û
Identical group No.504390 (12 seq.)
>WENV170965312
MTEU01000595
[MTEU] soil metagenome; naturally attenuated soil
5607
5532
-
Asn
GTT
[ENA]
¢þ
>WENV170966176
MTEX01003701
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
17666
17591
-
Asn
GTT
[ENA]
¢þ
>PHG181000710
KJ676859
Herelleviridae
Bacillus phage JBP901 (KJ676859)
158693
158618
-
Asn
GTT
[ENA]
¡û
>PHG181002326
KU737348
Herelleviridae
Bacillus phage Zuko (KU737348)
33777
33850
+
Asn
GTT
[ENA]
¡û
>PHG181002329
KU737349
Herelleviridae
Bacillus phage DIGNKC (KU737349)
33193
33266
+
Asn
GTT
[ENA]
¡û
>PHG181002586
KX147229
Herelleviridae
Bacillus phage Belinda (KX147229)
33227
33300
+
Asn
GTT
[ENA]
¡û
>PHG181003693
KX961629
Herelleviridae
Bacillus phage BJ4 (KX961629)
32254
32327
+
Asn
GTT
[ENA]
¡û
>PHG181003708
KX961632
Herelleviridae
Bacillus phage SBP8a (KX961632)
32688
32761
+
Asn
GTT
[ENA]
¡û
>PHG181005154
MF288919
Herelleviridae
Bacillus phage AaronPhadgers (MF288919)
33350
33423
+
Asn
GTT
[ENA]
¡û
>PHG181007246
MG763894
Herelleviridae
Bacillus phage HonestAbe (MG763894)
32991
33064
+
Asn
GTT
[ENA]
¡û
>PHG181008437
MH538193
Herelleviridae
Bacillus phage Saddex (MH538193)
33522
33595
+
Asn
GTT
[ENA]
¡û
>PHG14102825
KJ451625
Myoviridae
Bacillus phage Bcp1 TahiMoana (KJ451625)
31012
31087
+
Asn
GTT
[ENA]
¡û
Identical group No.504444 (3 seq.)
>PHG181001908
KT995480
Herelleviridae
Bacillus virus BM15 (KT995480)
29275
29350
+
Asn
GTT
[ENA]
¡û
>PHG181005157
MF288921
Herelleviridae
Bacillus phage OTooleKemple52 (MF288921)
31940
32014
+
Asn
GTT
[ENA]
¡û
>PHG181005957
MF498901
Herelleviridae
Bacillus phage Anthony (MF498901)
32463
32537
+
Asn
GTT
[ENA]
¡û
Identical group No.506676 (16 seq.)
>PHG0100389
DQ003638
Myoviridae
Listeria virus A511 T4dC-46 (DQ003638)
28523
28450
-
Asn
GTT
[ENA]
¡û
>PHG0100405
DQ004855
Myoviridae
Listeria virus P100 T4dC-46 (DQ004855)
126399
126326
-
Asn
GTT
[ENA]
¡û
>PHG181001512
KT319598
Myoviridae
Listeria phage WIL-2 (KT319598)
3233
3306
+
Asn
GTT
[ENA]
¡û
>PHG181001526
KT319610
Herelleviridae
Listeria phage WIL-3 (KT319610)
3154
3227
+
Asn
GTT
[ENA]
¡û
>PHG14101584
JQ797329
Myoviridae
Listeria phage vB_LmoM_AG20 Lu11 (JQ797329)
28531
28458
-
Asn
GTT
[ENA]
¡û
>PHG14101790
JX126918
Myoviridae
Listeria phage LP-125 Lu11 (JX126918)
37982
37909
-
Asn
GTT
[ENA]
¡û
>PHG14102708
KJ094029
Myoviridae
Listeria phage LP-064 RIP1 (KJ094029)
37983
37910
-
Asn
GTT
[ENA]
¡û
>PHG14102724
KJ094030
Myoviridae
Listeria phage LP-083-2 RIP1 (KJ094030)
34649
34576
-
Asn
GTT
[ENA]
¡û
>PHG14102740
KJ094031
Myoviridae
Listeria phage LP-124 RIP1 (KJ094031)
132534
132461
-
Asn
GTT
[ENA]
¡û
>PHG14102757
KJ094033
Myoviridae
Listeria phage LP-048 RIP1 (KJ094033)
30510
30437
-
Asn
GTT
[ENA]
¡û
>PHG14102910
KJ535721
Myoviridae
Listeria phage List-36 (KJ535721)
100528
100601
+
Asn
GTT
[ENA]
¡û
>PHG14102923
KJ535722
Myoviridae
Listeria phage LMSP-25 (KJ535722)
44388
44315
-
Asn
GTT
[ENA]
¡û
>PHG14102941
KJ586794
Myoviridae
Listeria phage LMTA-34 LMSP-25 (KJ586794)
44388
44315
-
Asn
GTT
[ENA]
¡û
>PHG14102963
KJ591604
Myoviridae
Listeria phage LMTA-148 LMSP-25 (KJ591604)
37178
37105
-
Asn
GTT
[ENA]
¡û
>PHG14102976
KJ591605
Myoviridae
Listeria phage LMTA-57 LMSP-25 (KJ591605)
113332
113405
+
Asn
GTT
[ENA]
¡û
>PHG14103139
KM373208
Myoviridae
Listeria phage WIL-1 81 (KM373208)
3521
3594
+
Asn
GTT
[ENA]
¡û
Identical group No.549158 (2 seq.)
>PHG181003697
KX961630
Herelleviridae
Bacillus phage QCM8 (KX961630)
27086
27161
+
Asn
GTT
[ENA]
¡û
>PHG14101348
JN797798
Myoviridae
Bacillus phage BCU4 Bongo (JN797798)
151628
151553
-
Asn
GTT
[ENA]
¡û
Identical group No.561435 (1 seq.)
>PHG181002345
KU847400
Herelleviridae
Bacillus phage Crookii (KU847400)
10253
10328
+
Asn
GTT
[ENA]
¡û
Identical group No.592222 (1 seq.)
>PHG181000672
KJ081346
Herelleviridae
Bacillus phage BCP8-2 (KJ081346)
36179
36104
-
Asn
GTT
[ENA]
¡û
Identical group No.601814 (1 seq.)
>PHG181001417
KT187252
Herelleviridae
Bacillus phage PBC6 (KT187252)
2484
2409
-
Asn
GTT
[ENA]
¡û
Identical group No.627245 (1 seq.)
>PHG181003365
KX495186
Herelleviridae
Bacillus phage PK16 (KX495186)
157302
157227
-
Asn
GTT
[ENA]
¡û
Identical group No.638995 (1 seq.)
>PHG183000859
MF288922
Herelleviridae
Bacillus phage Janet (MF288922)
32103
32177
+
Asn
GTT
[ENA]
¡û
Identical group No.646308 (1 seq.)
>PHG181008695
MH606185
Herelleviridae
Bacillus phage BSP38 (MH606185)
30968
31042
+
Asn
GTT
[ENA]
¡û
Identical group No.669925 (1 seq.)
>PHG181001999
KU253712
Herelleviridae
Bacillus phage Eldridge (KU253712)
31289
31363
+
Asn
GTT
[ENA]
¡û
Identical group No.687568 (4 seq.)
>WENV170965934
MTEV01010486
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
2225
2151
-
Asn
GTT
[ENA]
¢þ
>PHG181001437
KT224359
Herelleviridae
Bacillus phage TsarBomba (KT224359)
26645
26719
+
Asn
GTT
[ENA]
¡û
>PHG181003712
KX987999
Herelleviridae
Bacillus phage BCP12 (KX987999)
127746
127672
-
Asn
GTT
[ENA]
¡û
>PHG14101332
JN797797
Myoviridae
Bacillus phage BCP78 Bongo (JN797797)
2693
2619
-
Asn
GTT
[ENA]
¡û
Identical group No.697172 (4 seq.)
>PHG181004753
LT960608
Herelleviridae
Bacillus phage SBSphiJ (LT960608)
42354
42427
+
Asn
GTT
[ENA]
¡û
>PHG14100022
AB930182
Myoviridae
Bacillus phage SPG24 (AB930182)
109047
109120
+
Asn
GTT
[ENA]
¡û
>PHG14100045
AP013029
Myoviridae
Bacillus phage phiNIT1 (AP013029)
33749
33822
+
Asn
GTT
[ENA]
¡û
>PHG14102621
KF669652
Myoviridae
Bacillus phage Grass PM6 (KF669652)
31569
31642
+
Asn
GTT
[ENA]
¡û
Identical group No.707324 (9 seq.)
>W131174891
ARIV01000010
Bacillota
Salsuginibacillus kocurii DSM 18087 [ARIV]
50477
50551
+
Asn
GTT
[ENA]
¡û
>W131174897
ARIV01000015
Bacillota
Salsuginibacillus kocurii DSM 18087 [ARIV]
147763
147689
-
Asn
GTT
[ENA]
¡û
>W131174906
ARIV01000016
Bacillota
Salsuginibacillus kocurii DSM 18087 [ARIV]
168145
168071
-
Asn
GTT
[ENA]
¡û
>PHG181001531
KT319643
Herelleviridae
Listeria phage WIL-3 (KT319643)
398
324
-
Asn
GTT
[ENA]
¡û
>W1511538978
JZCU01000016
Bacillota
Listeria innocua 12KSM [JZCU]
720
646
-
Asn
GTT
[ENA]
¡û
>C161061493
CP013862
Bacillota
Lentibacillus amyloliquefaciens LAM0015 [CP013862]
2508188
2508114
-
Asn
GTT
[Ensembl]
¡û
>C161061514
CP013862
Bacillota
Lentibacillus amyloliquefaciens LAM0015 [CP013862]
2040446
2040372
-
Asn
GTT
[Ensembl]
¡û
>C161061530
CP013862
Bacillota
Lentibacillus amyloliquefaciens LAM0015 [CP013862]
1092106
1092032
-
Asn
GTT
[Ensembl]
¡û
>W1710560921
FONT01000004
Bacillota
Alteribacillus iranensis [FONT]
1774
1700
-
Asn
GTT
[ENA]
¡û
Identical group No.725983 (3 seq.)
>PHG0100610
FJ230960
Myoviridae
Bacillus virus SPO1 wBol1b (FJ230960)
28208
28282
+
Asn
GTT
[ENA]
¡û
>PHG181003954
KY368639
Herelleviridae
Bacillus phage vB_BsuM-Goe2 (KY368639)
28541
28615
+
Asn
GTT
[ENA]
¡û
>PHG14102615
KF669649
Myoviridae
Bacillus phage CampHawk PM6 (KF669649)
29027
29101
+
Asn
GTT
[ENA]
¡û
Identical group No.725984 (1 seq.)
>PHG181003957
KY368640
Herelleviridae
Bacillus phage vB_BsuM-Goe3 (KY368640)
30657
30730
+
Asn
GTT
[ENA]
¡û
Identical group No.755887 (1 seq.)
>PHG181002080
KU577463
Herelleviridae
Bacillus phage Deep Blue (KU577463)
142701
142627
-
Asn
GTT
[ENA]
¡û
Identical group No.755892 (1 seq.)
>PHG181005620
MF422185
Herelleviridae
Bacillus phage BSP10 (MF422185)
112418
112491
+
Asn
GTT
[ENA]
¡û
Identical group No.816792 (3 seq.)
>WENV180279075
OBHX01015602
[OBHX] metagenome; feces
1065
1137
+
Asn
GTT
[ENA]
¢þ
>WENV170560016
CYGL01000015
[CYGL] human gut metagenome;
47385
47457
+
Asn
GTT
[ENA]
¢þ
>PHG181000866
KP339049
Herelleviridae
Enterococcus phage EFDG1 (KP339049)
54004
53932
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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