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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herelleviridae
Anticodon = TAA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.123655 (3 seq.)
>WENV170965950
MTEV01010523
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
71
157
+
Leu
TAA
[ENA]
¢þ
>PHG181001918
KT995480
Herelleviridae
Bacillus virus BM15 (KT995480)
30678
30764
+
Leu
TAA
[ENA]
¡û
>PHG14102835
KJ451625
Myoviridae
Bacillus phage Bcp1 TahiMoana (KJ451625)
32516
32602
+
Leu
TAA
[ENA]
¡û
Identical group No.140693 (1 seq.)
>PHG183000025
KJ081346
Herelleviridae
Bacillus phage BCP8-2 (KJ081346)
34033
33947
-
Leu
TAA
[ENA]
¡û
Identical group No.146434 (1 seq.)
>PHG181002091
KU577463
Herelleviridae
Bacillus phage Deep Blue (KU577463)
140748
140662
-
Leu
TAA
[ENA]
¡û
Identical group No.147998 (2 seq.)
>WENV170560031
CYGL01000015
[CYGL] human gut metagenome;
53759
53844
+
Leu
TAA
[ENA]
¢þ
>PHG181000882
KP339049
Herelleviridae
Enterococcus phage EFDG1 (KP339049)
48082
47997
-
Leu
TAA
[ENA]
¡û
Identical group No.147999 (1 seq.)
>PHG181003374
KX495186
Herelleviridae
Bacillus phage PK16 (KX495186)
154940
154854
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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