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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herpesvirales
Anticodon = AGT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.703700 (2 seq.)
>VRL181000002
EF495130
Herpesvirales
Wood mouse herpesvirus Brest/An711 (EF495130)
2969
3040
+
Thr
AGT
[ENA]
¡û
>VRL181000011
GQ169129
Herpesvirales
Wood mouse herpesvirus WM8 (GQ169129)
1494
1565
+
Thr
AGT
[ENA]
¡û
Identical group No.721195 (3 seq.)
>VRL0100046
AF105037
Herpesvirales
Murid herpesvirus 4
1588
1659
+
Thr
AGT
[ENA]
¡û
>VRL0100065
U97553
Herpesvirales
Murid herpesvirus 4
1588
1659
+
Thr
AGT
[ENA]
¡û
>VRL0100068
Y11705
Herpesvirales
Murid herpesvirus 4
1483
1554
+
Thr
AGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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