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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Herpesvirales
Anticodon = CAT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.536296 (2 seq.)
>VRL181000001
EF495130
Herpesvirales
Wood mouse herpesvirus Brest/An711 (EF495130)
2563
2636
+
Met
CAT
[ENA]
¡û
>VRL181000010
GQ169129
Herpesvirales
Wood mouse herpesvirus WM8 (GQ169129)
1088
1161
+
Met
CAT
[ENA]
¡û
Identical group No.564471 (3 seq.)
>VRL0100045
AF105037
Herpesvirales
Murid herpesvirus 4
1182
1255
+
Met
CAT
[ENA]
¡û
>VRL0100064
U97553
Herpesvirales
Murid herpesvirus 4
1182
1255
+
Met
CAT
[ENA]
¡û
>VRL0100067
Y11705
Herpesvirales
Murid herpesvirus 4
1077
1150
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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