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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = CCT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458201 (1 seq.)
>W1711414508
MGZO01000089
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
53962
53887
-
Arg
CCT
[ENA]
¡û
Identical group No.487292 (4 seq.)
>W1710892842
LNEE01000013
Betaproteobacteria
Betaproteobacteria bacterium Ga0077532 [LNEE]
63980
63905
-
Arg
CCT
[ENA]
¡û
>W1711414480
MGZN01000290
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYA1_FULL_63_33 [MGZN]
285
210
-
Arg
CCT
[ENA]
¡û
>WENV170709766
LNFM01000678
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
20656
20731
+
Arg
CCT
[ENA]
¢þ
>W1610753108
LNEE01000013
Betaproteobacteria
Betaproteobacteria bacterium Ga0077532 [LNEE]
63980
63905
-
Arg
CCT
[ENA]
¡û
Identical group No.603679 (1 seq.)
>W1711583438
MNXE01000063
Hydrogenophilia
Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE]
33176
33251
+
Arg
CCT
[ENA]
¡û
Identical group No.721615 (4 seq.)
>W131225578
AUDR01000015
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
65208
65136
-
Arg
CCT
[ENA]
¡û
>W1510741379
CYHH01000007
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
55826
55898
+
Arg
CCT
[ENA]
¡û
>W1610632380
LIPU01000007
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
55826
55898
+
Arg
CCT
[ENA]
¡û
>W1710766766
LIPU01000007
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
55826
55898
+
Arg
CCT
[ENA]
¡û
Identical group No.726102 (1 seq.)
>C191003428
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
983582
983654
+
Arg
CCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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