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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = CCT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.547129 (9 seq.)
>W1710892367
LNDQ01000143
Betaproteobacteria
Betaproteobacteria bacterium Ga0077523 [LNDQ]
8163
8088
-
Arg
CCT
[ENA]
¡û
>C171089772
CP019169
Betaproteobacteria
Betaproteobacteria bacterium GR16-43 [CP019169]
3907029
3907104
+
Arg
CCT
-
¡û
>WENV181191603
OEPS010135318
[OEPS] soil metagenome; soil
142
217
+
Arg
CCT
[ENA]
¡û
>WENV183685356
ORMF010835860
[ORMF] groundwater metagenome; groundwater
111
186
+
Arg
CCT
[ENA]
¡û
>WENV183702706
PDVI01026985
[PDVI] alkali sediment metagenome; glacial lake sediment
242
167
-
Arg
CCT
[ENA]
¡û
>WENV170712798
LNFM01017934
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
192
267
+
Arg
CCT
[ENA]
¡û
>W2012123925
VPFL01000006
Hydrogenophilia
Hydrogenophilales bacterium SM250 [VPFL]
28343
28268
-
Arg
CCT
[ENA]
¡û
>C241154047
CP053069
Betaproteobacteria
Usitatibacter rugosus 0125_3 [CP053069]
1820074
1819999
-
Arg
CCT
-
¡û
>W1610752633
LNDQ01000143
Betaproteobacteria
Betaproteobacteria bacterium Ga0077523 [LNDQ]
8163
8088
-
Arg
CCT
[ENA]
¡û
Identical group No.597099 (4 seq.)
>W1710892842
LNEE01000013
Betaproteobacteria
Betaproteobacteria bacterium Ga0077532 [LNEE]
63980
63905
-
Arg
CCT
[ENA]
¡û
>W1711414480
MGZN01000290
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYA1_FULL_63_33 [MGZN]
285
210
-
Arg
CCT
[ENA]
¡û
>WENV170709766
LNFM01000678
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
20656
20731
+
Arg
CCT
[ENA]
¡û
>W1610753108
LNEE01000013
Betaproteobacteria
Betaproteobacteria bacterium Ga0077532 [LNEE]
63980
63905
-
Arg
CCT
[ENA]
¡û
Identical group No.738631 (8 seq.)
>WENV170128088
CENP01322017
[CENP] marine metagenome genome assembly TARA_030_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
394
468
+
Arg
CCT
[ENA]
¡û
>WENV170470148
CEVF01163808
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
264
190
-
Arg
CCT
[ENA]
¡û
>WENV170857055
MDTB01003460
[MDTB] marine metagenome; seawater
20065
20139
+
Arg
CCT
[ENA]
¡û
>WENV170865661
MDTB01122348
[MDTB] marine metagenome; seawater
17
91
+
Arg
CCT
[ENA]
¡û
>WENV170894362
MDTD01064239
[MDTD] marine metagenome; seawater
6955
7029
+
Arg
CCT
[ENA]
¡û
>WENV027983
AACY021086765
Marine microbial communities from Global Ocean Sampling (GOS)
736
662
-
Arg
CCT
[ENA]
>W2010316217
CACKOO010000008
Hydrogenophilia
Hydrogenophilales bacterium [CACKOO]
6240
6314
+
Arg
CCT
[ENA]
¡û
>WENV044860
AACY022460160
Marine microbial communities from Global Ocean Sampling (GOS)
34
108
+
Arg
CCT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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