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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = CGA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16421 (4 seq.)
>W131225588
AUDR01000018
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
234
142
-
Ser
CGA
[ENA]
¡û
>W1510741393
CYHH01000016
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
2012
2104
+
Ser
CGA
[ENA]
¡û
>W1610632394
LIPU01000016
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
2012
2104
+
Ser
CGA
[ENA]
¡û
>W1710766780
LIPU01000016
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
2012
2104
+
Ser
CGA
[ENA]
¡û
Identical group No.16710 (1 seq.)
>C191003416
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
467604
467696
+
Ser
CGA
-
¡û
Identical group No.46457 (11 seq.)
>W131168080
ARDU01000003
Betaproteobacteria
Thiobacillus thioparus DSM 505 [ARDU]
268761
268672
-
Ser
CGA
[ENA]
¡û
>W1711386440
MEFI01000124
Betaproteobacteria
Thiobacillus sp. SCN 63-1177 [MEFI]
3289
3200
-
Ser
CGA
[ENA]
¡û
>W1711386452
MEFK01000081
Betaproteobacteria
Thiobacillus sp. SCN 63-374 [MEFK]
2652
2563
-
Ser
CGA
[ENA]
¡û
>W1711387278
MEGM01000047
Betaproteobacteria
Rubrivivax sp. SCN 70-15 [MEGM]
10
99
+
Ser
CGA
[ENA]
¡û
>W1711387373
MEGO01000047
Betaproteobacteria
Thiobacillus sp. SCN 64-317 [MEGO]
18614
18703
+
Ser
CGA
[ENA]
¡û
>W1711387392
MEGP01000013
Betaproteobacteria
Thiobacillus sp. SCN 63-57 [MEGP]
148482
148571
+
Ser
CGA
[ENA]
¡û
>W1711414491
MGZO01000001
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
3815
3726
-
Ser
CGA
[ENA]
¡û
>W1711504057
MKUE01000131
Betaproteobacteria
Thiobacillus sp. 65-1059 [MKUE]
68839
68750
-
Ser
CGA
[ENA]
¡û
>W1711504144
MKUG01000197
Betaproteobacteria
Thiobacillus sp. 65-1402 [MKUG]
4301
4212
-
Ser
CGA
[ENA]
¡û
>W1711506490
MKWL01000010
Betaproteobacteria
Thiobacillus sp. 0-1251 [MKWL]
17329
17418
+
Ser
CGA
[ENA]
¡û
>W1711506528
MKWM01000015
Betaproteobacteria
Thiobacillus sp. 63-78 [MKWM]
73727
73816
+
Ser
CGA
[ENA]
¡û
Identical group No.57539 (2 seq.)
>W1711583428
MNXE01000046
Hydrogenophilia
Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE]
12110
12199
+
Ser
CGA
[ENA]
¡û
>WENV181293772
OFHG01023015
[OFHG] soil metagenome; Clay
542
453
-
Ser
CGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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