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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = GAA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458199 (9 seq.)
>W131168096
ARDU01000010
Betaproteobacteria
Thiobacillus thioparus DSM 505 [ARDU]
176843
176918
+
Phe
GAA
[ENA]
¡û
>W1711387408
MEGP01000034
Betaproteobacteria
Thiobacillus sp. SCN 63-57 [MEGP]
14351
14276
-
Phe
GAA
[ENA]
¡û
>W1711414503
MGZO01000057
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
13950
14025
+
Phe
GAA
[ENA]
¡û
>W1711506511
MKWL01000022
Betaproteobacteria
Thiobacillus sp. 0-1251 [MKWL]
16216
16141
-
Phe
GAA
[ENA]
¡û
>W1711583421
MNXE01000031
Hydrogenophilia
Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE]
16740
16665
-
Phe
GAA
[ENA]
¡û
>WENV180310882
OBJT01043931
[OBJT] soil metagenome; soil
177
252
+
Phe
GAA
[ENA]
¢þ
>WENV181190850
OEPS010005075
[OEPS] soil metagenome; soil
412
487
+
Phe
GAA
[ENA]
¢þ
>WENV170668241
LADL02002084
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
14108
14033
-
Phe
GAA
[ENA]
¢þ
>W1910128371
BHVV01000002
Betaproteobacteria
Sulfurisoma sediminicola BSN1 [BHVV]
360243
360318
+
Phe
GAA
[ENA]
¡û
Identical group No.511840 (11 seq.)
>W1711223626
LXTK01000220
Unclassified
Proteobacteria bacterium SPGG2 [LXTK]
1350
1274
-
Phe
GAA
[ENA]
¡û
>W131225562
AUDR01000014
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
169122
169197
+
Phe
GAA
[ENA]
¡û
>W1711388814
MEID01000022
Gammaproteobacteria
Ectothiorhodospiraceae bacterium AqS1 [MEID]
3620
3695
+
Phe
GAA
[ENA]
¡û
>WENV180068988
MPLZ02078490
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
115915
115990
+
Phe
GAA
[ENA]
¢þ
>WENV170008250
AMZC01006061
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
206
131
-
Phe
GAA
[ENA]
¢þ
>WENV170701612
LKGT01011535
[LKGT] marine sediment metagenome; sediment sample collected at the water-sediment interface from the South Pacific gyre, IODP
1350
1274
-
Phe
GAA
[ENA]
¢þ
>C191003437
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
1956213
1956288
+
Phe
GAA
-
¡û
>W1510741383
CYHH01000008
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
6128
6053
-
Phe
GAA
[ENA]
¡û
>W1610632384
LIPU01000008
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
6128
6053
-
Phe
GAA
[ENA]
¡û
>W1611007997
LXTK01000220
Unclassified
Proteobacteria bacterium SPGG2 [LXTK]
1350
1274
-
Phe
GAA
[ENA]
¡û
>W1710766770
LIPU01000008
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
6128
6053
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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