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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = GAC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274552 (142 seq.)
>W1710798709
LJTV01000123
Gammaproteobacteria
Gammaproteobacteria bacterium SG8_47 [LJTV]
377
453
+
Val
GAC
[ENA]
¡û
>W1710893064
LNEJ01000051
Gammaproteobacteria
Gammaproteobacteria bacterium Ga0074134 [LNEJ]
163
239
+
Val
GAC
[ENA]
¡û
>WENV011259
AACY020306880
Marine microbial communities from Global Ocean Sampling (GOS)
3405
3329
-
Val
GAC
[ENA]
>C171062118
CP017415
Gammaproteobacteria
Acidihalobacter yilgarnensis F5 [CP017415]
1577605
1577681
+
Val
GAC
-
¡û
>C171089766
CP019169
Betaproteobacteria
Betaproteobacteria bacterium GR16-43 [CP019169]
2957073
2957149
+
Val
GAC
-
¡û
>W131050861
AMXD01000005
Betaproteobacteria
Thauera aminoaromatica S2 [AMXD]
45390
45466
+
Val
GAC
[ENA]
¡û
>W131099658
AOTL01000008
Gammaproteobacteria
Methylotuvimicrobium buryatense 5G [AOTL]
31953
31877
-
Val
GAC
[ENA]
¡û
>W131161361
AQXP01000051
Gammaproteobacteria
Thioalkalivibrio sp. ALJ11 [AQXP]
27395
27471
+
Val
GAC
[ENA]
¡û
>W131161953
AQYE01000006
Gammaproteobacteria
Thioalkalivibrio sp. ALJ9 [AQYE]
61997
62073
+
Val
GAC
[ENA]
¡û
>W131163533
AQZU01000003
Gammaproteobacteria
Methylovulum miyakonense HT12 [AQZU]
227353
227277
-
Val
GAC
[ENA]
¡û
>W131166847
ARCU01000003
Gammaproteobacteria
Methylosarcina fibrata AML-C10 [ARCU]
463123
463199
+
Val
GAC
[ENA]
¡û
>W131170391
ARFM01000014
Gammaproteobacteria
Thioalkalivibrio versutus AL2 [ARFM]
130485
130409
-
Val
GAC
[ENA]
¡û
>W131173710
ARHW01000012
Gammaproteobacteria
Thioalkalivibrio sp. ALJ3 [ARHW]
17451
17527
+
Val
GAC
[ENA]
¡û
>W131173744
ARHX01000008
Gammaproteobacteria
Thioalkalivibrio sp. ALJ4 [ARHX]
195036
194960
-
Val
GAC
[ENA]
¡û
>W131173790
ARHY01000007
Gammaproteobacteria
Thioalkalivibrio sp. ALJ5 [ARHY]
97768
97692
-
Val
GAC
[ENA]
¡û
>W131173852
ARHZ01000014
Gammaproteobacteria
Thioalkalivibrio sp. ARh3 [ARHZ]
174087
174011
-
Val
GAC
[ENA]
¡û
>W131173936
ARIB01000013
Gammaproteobacteria
Thioalkalivibrio sp. ALJ10 [ARIB]
148706
148630
-
Val
GAC
[ENA]
¡û
>W131174095
ARIF01000009
Gammaproteobacteria
Thioalkalivibrio sp. ALJ8 [ARIF]
208865
208941
+
Val
GAC
[ENA]
¡û
>W131175171
ARJA01000033
Gammaproteobacteria
Thioalkalivibrio sp. AKL3 [ARJA]
188362
188286
-
Val
GAC
[ENA]
¡û
>W131175215
ARJB01000029
Gammaproteobacteria
Thioalkalivibrio sp. AKL9 [ARJB]
188362
188286
-
Val
GAC
[ENA]
¡û
>W131176315
ARJY01000012
Gammaproteobacteria
Thioalkalivibrio sp. ARh4 [ARJY]
195012
194936
-
Val
GAC
[ENA]
¡û
>W131176360
ARJZ01000008
Gammaproteobacteria
Thioalkalivibrio sp. ALgr1 [ARJZ]
317028
316952
-
Val
GAC
[ENA]
¡û
>W131176401
ARKA01000009
Gammaproteobacteria
Thioalkalivibrio sp. ALJ12 [ARKA]
208834
208910
+
Val
GAC
[ENA]
¡û
>W131176453
ARKB01000012
Gammaproteobacteria
Thioalkalivibrio sp. ALJ2 [ARKB]
367789
367713
-
Val
GAC
[ENA]
¡û
>W131177077
ARKN01000007
Gammaproteobacteria
Thioalkalivibrio sp. AL5 [ARKN]
62764
62840
+
Val
GAC
[ENA]
¡û
>W131177116
ARKO01000002
Gammaproteobacteria
Thioalkalivibrio sp. ALJ20 [ARKO]
268057
268133
+
Val
GAC
[ENA]
¡û
>W131177171
ARKP01000001
Gammaproteobacteria
Thioalkalivibrio sp. ALJ21 [ARKP]
792275
792199
-
Val
GAC
[ENA]
¡û
>W131178371
ARLN01000006
Gammaproteobacteria
Thioalkalivibrio sp. ALD1 [ARLN]
304756
304832
+
Val
GAC
[ENA]
¡û
>W131178569
ARLR01000001
Gammaproteobacteria
Thioalkalivibrio sp. AL21 [ARLR]
792264
792188
-
Val
GAC
[ENA]
¡û
>W131178770
ARLV01000008
Gammaproteobacteria
Thioalkalivibrio sp. ALRh [ARLV]
169029
168953
-
Val
GAC
[ENA]
¡û
>W131179648
ARMO01000011
Gammaproteobacteria
Thioalkalivibrio sp. ARh5 [ARMO]
307527
307451
-
Val
GAC
[ENA]
¡û
>W131182479
ARQK01000042
Gammaproteobacteria
Thioalkalivibrio thiocyanoxidans ARh2 [ARQK]
37835
37759
-
Val
GAC
[ENA]
¡û
>W131185574
ARTU01000005
Gammaproteobacteria
Thioalkalivibrio sp. ALJ15 [ARTU]
10098
10022
-
Val
GAC
[ENA]
¡û
>W131186002
ARVS01000001
Gammaproteobacteria
Methylobacter marinus A45 [ARVS]
816286
816210
-
Val
GAC
[ENA]
¡û
>W131219210
ATYJ01000001
Gammaproteobacteria
Methylobacter luteus IMV-B-3098 [ATYJ]
2181984
2181908
-
Val
GAC
[ENA]
¡û
>W131225554
AUDR01000006
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
8186
8110
-
Val
GAC
[ENA]
¡û
>W131233894
AUKJ01000006
Gammaproteobacteria
Methylococcus capsulatus str. Texas = ATCC 19069 [AUKJ]
43216
43140
-
Val
GAC
[ENA]
¡û
>C001290
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
1162391
1162467
+
Val
GAC
[Ensembl]
¡û
>C013282
AE017282
Gammaproteobacteria
Methylococcus capsulatus str. Bath [AE017282]
729050
729126
+
Val
GAC
[Ensembl]
¡û
>WENV180293837
OBIY01002135
[OBIY] beach sand metagenome; beach sand
3494
3418
-
Val
GAC
[ENA]
¢þ
>WENV180309302
OBJS01000037
[OBJS] beach sand metagenome; beach sand
1550
1626
+
Val
GAC
[ENA]
¢þ
>WENV180320876
OBKQ01042463
[OBKQ] soil metagenome; Clay
225
301
+
Val
GAC
[ENA]
¢þ
>W141041607
AMCE01000097
Gammaproteobacteria
Methylococcus capsulatus str. Texas = ATCC 19069 [AMCE]
35108
35032
-
Val
GAC
[ENA]
¡û
>W141055254
AONC01000070
Gammaproteobacteria
Imhoffiella purpurea AK35 [AONC]
26500
26576
+
Val
GAC
[ENA]
¡û
>WENV180889343
ODMN01031437
[ODMN] human metagenome; G_DNA_Supragingival plaque
700
776
+
Val
GAC
[ENA]
¢þ
>WENV180922294
ODTJ01002355
[ODTJ] human metagenome; G_DNA_Supragingival plaque
735
811
+
Val
GAC
[ENA]
¢þ
>WENV180944343
ODUC01014505
[ODUC] human metagenome; G_DNA_Supragingival plaque
2
78
+
Val
GAC
[ENA]
¢þ
>WENV181067159
ODZI01008063
[ODZI] human metagenome; G_DNA_Supragingival plaque
2390
2314
-
Val
GAC
[ENA]
¢þ
>WENV181170757
OEIV010083857
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
736
812
+
Val
GAC
[ENA]
¢þ
>WENV181288140
OFGY01014767
[OFGY] soil metagenome; Clay
900
824
-
Val
GAC
[ENA]
¢þ
>WENV181294566
OFHH01010548
[OFHH] soil metagenome; Clay
1190
1266
+
Val
GAC
[ENA]
¢þ
>WENV181367762
OFQD01000005
[OFQD] freshwater metagenome; Freshwater Lake
1
77
+
Val
GAC
[ENA]
¢þ
>WENV181367824
OFQD01000757
[OFQD] freshwater metagenome; Freshwater Lake
77
1
-
Val
GAC
[ENA]
¢þ
>WENV181367899
OFQD01005506
[OFQD] freshwater metagenome; Freshwater Lake
776
852
+
Val
GAC
[ENA]
¢þ
>WENV181391867
OFRV01000014
[OFRV] freshwater metagenome; Freshwater Lake
10238
10162
-
Val
GAC
[ENA]
¢þ
>WENV181395477
OFSA01000156
[OFSA] freshwater metagenome; Freshwater Lake
6624
6548
-
Val
GAC
[ENA]
¢þ
>WENV181413021
OGCK01021746
[OGCK] hot springs metagenome; hot spring sediment
244
168
-
Val
GAC
[ENA]
¢þ
>WENV181415259
OGCL01006768
[OGCL] hot springs metagenome; Hot spring water
3616
3692
+
Val
GAC
[ENA]
¢þ
>W141187088
AYLO01000040
Gammaproteobacteria
Methyloglobulus morosus KoM1 [AYLO]
37966
38042
+
Val
GAC
[ENA]
¡û
>W08007983
ABKT01000001
Betaproteobacteria
Thauera sp. MZ1T [ABKT] MZ1T [ABKT]
92641
92568
-
Val
GAC
[ENA]
¡û
>W141215975
AZUN01000001
Gammaproteobacteria
Methylomicrobium lacus LW14 [AZUN]
3651934
3652010
+
Val
GAC
[ENA]
¡û
>W141254793
CBTJ020000017
Gammaproteobacteria
Candidatus Competibacter denitrificans denitrificans Run_A_D11 [CBTJ]
27346
27270
-
Val
GAC
[ENA]
¡û
>W141254875
CBTK010000278
Gammaproteobacteria
Candidatus Contendobacter odensis odensis Run_B_J11 [CBTK]
46623
46547
-
Val
GAC
[ENA]
¡û
>WENV183671866
ORJL011110496
[ORJL] groundwater metagenome; groundwater
82
6
-
Val
GAC
[ENA]
¢þ
>WENV183678096
ORJL011836650
[ORJL] groundwater metagenome; groundwater
8030
7954
-
Val
GAC
[ENA]
¢þ
>WENV183692571
ORMF011939722
[ORMF] groundwater metagenome; groundwater
1707
1783
+
Val
GAC
[ENA]
¢þ
>WENV183694445
ORMF012234340
[ORMF] groundwater metagenome; groundwater
6803
6879
+
Val
GAC
[ENA]
¢þ
>WENV183717822
PDWJ01001708
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
25791
25715
-
Val
GAC
[ENA]
¢þ
>WENV170008107
AMZC01001809
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
177
253
+
Val
GAC
[ENA]
¢þ
>WENV170009672
APMI01001568
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
27408
27332
-
Val
GAC
[ENA]
¢þ
>WENV170012230
APMI01139207
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
578
502
-
Val
GAC
[ENA]
¢þ
>WENV170552311
CXWJ01054381
[CXWJ] wastewater metagenome; activated sludge
584
660
+
Val
GAC
[ENA]
¢þ
>WENV170553245
CXWK01012281
[CXWK] wastewater metagenome; activated sludge
3289
3365
+
Val
GAC
[ENA]
¢þ
>WENV170556022
CXWL01003971
[CXWL] groundwater metagenome; biofilm material
2898
2974
+
Val
GAC
[ENA]
¢þ
>WENV170556993
CXWL01017349
[CXWL] groundwater metagenome; biofilm material
1549
1473
-
Val
GAC
[ENA]
¢þ
>WENV170561376
CZCA01007553
[CZCA] anaerobic digester metagenome; anaerobic digester
1132
1056
-
Val
GAC
[ENA]
¢þ
>WENV170639505
JFJP01003775
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1745
1669
-
Val
GAC
[ENA]
¢þ
>WENV170650043
JRYD01006504
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
1990
1914
-
Val
GAC
[ENA]
¢þ
>WENV170651206
JRYF01002610
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
9382
9306
-
Val
GAC
[ENA]
¢þ
>WENV170651888
JRYG01010850
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
3273
3197
-
Val
GAC
[ENA]
¢þ
>WENV170654290
JRYK01063294
[JRYK] activated sludge metagenome; activated biomass of a wastewaster treatment plant treating hydrocarbon contaminated
777
701
-
Val
GAC
[ENA]
¢þ
>WENV170655694
JTFN01059005
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
286
210
-
Val
GAC
[ENA]
¢þ
>WENV170708386
LNAP01076484
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
155
231
+
Val
GAC
[ENA]
¢þ
>WENV170712518
LNFM01014242
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
279
355
+
Val
GAC
[ENA]
¢þ
>WENV170712805
LNFM01018075
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
7809
7733
-
Val
GAC
[ENA]
¢þ
>WENV170963382
MRWG01000146
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
173628
173704
+
Val
GAC
[ENA]
¢þ
>W09133832
ACQQ01000021
Gammaproteobacteria
Allochromatium vinosum DSM 180 [ACQQ]
45456
45532
+
Val
GAC
[ENA]
¡û
>C181004570
AP018052
Gammaproteobacteria
Thiohalobacter thiocyanaticus FOKN1 [AP018052]
2261550
2261474
-
Val
GAC
-
¡û
>C181059027
CP022129
Gammaproteobacteria
Methylovulum psychrotolerans HV10_M2 [CP022129]
3659078
3659154
+
Val
GAC
-
¡û
>C191003417
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
523064
523140
+
Val
GAC
-
¡û
>C191022882
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
1381482
1381558
+
Val
GAC
-
¡û
>C191143425
CP035467
Gammaproteobacteria
Methylotuvimicrobium buryatense 5GB1C [CP035467]
1630412
1630488
+
Val
GAC
-
¡û
>W141807383
JPOJ01000001
Gammaproteobacteria
Methylomicrobium agile [JPOJ]
2255423
2255499
+
Val
GAC
[ENA]
¡û
>W141817433
JQKS01000004
Gammaproteobacteria
Methylobacter sp. BBA5.1 [JQKS]
210060
209984
-
Val
GAC
[ENA]
¡û
>W141821709
JQNS01000005
Gammaproteobacteria
Methylobacter whittenburyi [JQNS]
1395536
1395612
+
Val
GAC
[ENA]
¡û
>W141822417
JQSG01000001
Gammaproteobacteria
Acidihalobacter prosperus [JQSG]
280391
280315
-
Val
GAC
[ENA]
¡û
>W1910377374
FUKJ01000182
Gammaproteobacteria
Crenothrix polyspora [FUKJ]
975
899
-
Val
GAC
[ENA]
¡û
>W1910699354
MERG01000290
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 [MERG]
11170
11246
+
Val
GAC
[ENA]
¡û
>W1910729537
MGYR01000171
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_56_15 [MGYR]
7469
7393
-
Val
GAC
[ENA]
¡û
>W1910914344
NHSY01000026
Gammaproteobacteria
Pseudomonas syringae Knox652c [NHSY]
199623
199547
-
Val
GAC
[ENA]
¡û
>W1911496604
OCMU01000001
Betaproteobacteria
Nitrosomonas ureae Nm42 [OCMU]
122042
121966
-
Val
GAC
[ENA]
¡û
>W1911817844
QZMU01000002
Gammaproteobacteria
Thiohalobacter thiocyanaticus Hrh1 [QZMU]
231584
231508
-
Val
GAC
[ENA]
¡û
>W1810090403
PGFZ01000007
Gammaproteobacteria
Methylovulum psychrotolerans Sph1 [PGFZ]
31882
31958
+
Val
GAC
[ENA]
¡û
>W1810236311
PPGH01000035
Gammaproteobacteria
Chromatium okenii LaCa [PPGH]
502575
502499
-
Val
GAC
[ENA]
¡û
>W1810389550
PXXU01000023
Betaproteobacteria
Nitrosomonas supralitoralis APG5 [PXXU]
18603
18679
+
Val
GAC
[ENA]
¡û
>W1810444893
PZKC01000003
Betaproteobacteria
Pseudothauera lacus D20 [PZKC]
159708
159784
+
Val
GAC
[ENA]
¡û
>W1810476993
QAOL01000029
Betaproteobacteria
Nitrosomonas ureae Nm4 [QAOL]
26144
26068
-
Val
GAC
[ENA]
¡û
>W1810608507
QGTJ01000019
Gammaproteobacteria
Plasticicumulans acidivorans DSM 23606 [QGTJ]
12788
12864
+
Val
GAC
[ENA]
¡û
>W1810608508
QGTJ01000019
Gammaproteobacteria
Plasticicumulans acidivorans DSM 23606 [QGTJ]
12983
13059
+
Val
GAC
[ENA]
¡û
>W1810659208
QJJW01000021
Betaproteobacteria
Nitrosomonas ureae Nm5 [QJJW]
15709
15785
+
Val
GAC
[ENA]
¡û
>C151001113
AP012978
Gammaproteobacteria
endosymbiont of unidentified scaly snail isolate Monju [AP012978]
1395619
1395543
-
Val
GAC
[Ensembl]
¡û
>C151016189
CP007029
Gammaproteobacteria
Thioalkalivibrio paradoxus ARh 1 [CP007029]
2059741
2059665
-
Val
GAC
[Ensembl]
¡û
>ENV09000781
ABSP01034580
Freshwater sediment metagenome lwMethane_C1
470
394
-
Val
GAC
[ENA]
¡û
>C10101198
CP001896
Gammaproteobacteria
Allochromatium vinosum DSM 180 [CP001896]
1134672
1134748
+
Val
GAC
[Ensembl]
¡û
>C10113210
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
3277361
3277285
-
Val
GAC
[Ensembl]
¡û
>W1510741388
CYHH01000013
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
8319
8243
-
Val
GAC
[ENA]
¡û
>W1511398329
JTDM01000021
Betaproteobacteria
Thauera sp. SWB20 [JTDM]
753930
753854
-
Val
GAC
[ENA]
¡û
>W1511569393
LAJX01000029
Gammaproteobacteria
Methylocucumis oryzae Sn10-6 [LAJX]
50561
50637
+
Val
GAC
[ENA]
¡û
>W11164377
AFJF01000012
Gammaproteobacteria
Methylomicrobium album BG8 [AFJF]
123631
123555
-
Val
GAC
[ENA]
¡û
>W11176080
AFWT01000051
Gammaproteobacteria
Thiorhodococcus drewsii AZ1 [AFWT]
23324
23400
+
Val
GAC
[ENA]
¡û
>W11176169
AFWV01000011
Gammaproteobacteria
Thiocapsa marina 5811 [AFWV]
66440
66364
-
Val
GAC
[ENA]
¡û
>W11178576
AGFB01000002
Gammaproteobacteria
Thioalkalivibrio thiocyanoxidans ARh 4 [AGFB]
20583
20659
+
Val
GAC
[ENA]
¡û
>C161050902
CP013099
Gammaproteobacteria
Candidatus Tenderia electrophaga [CP013099]
1673556
1673632
+
Val
GAC
-
¡û
>C161055567
CP013341
Betaproteobacteria
Nitrosomonas ureae Nm10 [CP013341]
1771240
1771316
+
Val
GAC
[Ensembl]
¡û
>C161075964
CP014671
Gammaproteobacteria
Immundisolibacter cernigliae TR3.2 [CP014671]
1037836
1037912
+
Val
GAC
[Ensembl]
¡û
>C161095077
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
1244229
1244305
+
Val
GAC
-
¡û
>W1610042907
BAZL01000122
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
3714
3638
-
Val
GAC
[ENA]
¡û
>W1610085767
CVPF01000005
Gammaproteobacteria
Thiocapsa sp. KS1 [CVPF]
12969
12893
-
Val
GAC
[ENA]
¡û
>C131001771
CP003051
Gammaproteobacteria
Thioflavicoccus mobilis 8321 [CP003051]
3125160
3125084
-
Val
GAC
[Ensembl]
¡û
>W1610632389
LIPU01000013
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
8319
8243
-
Val
GAC
[ENA]
¡û
>W1610634098
LIRD01000002
Gammaproteobacteria
Pseudomonas nunensis In5 [LIRD]
2437629
2437553
-
Val
GAC
[ENA]
¡û
>W1610662666
LJTV01000123
Gammaproteobacteria
Gammaproteobacteria bacterium SG8_47 [LJTV]
377
453
+
Val
GAC
[ENA]
¡û
>W1610753330
LNEJ01000051
Gammaproteobacteria
Gammaproteobacteria bacterium Ga0074134 [LNEJ]
163
239
+
Val
GAC
[ENA]
¡û
>W1710040067
BAZL01000122
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
3714
3638
-
Val
GAC
[ENA]
¡û
>W1710090356
CVPF01000005
Gammaproteobacteria
Thiocapsa sp. KS1 [CVPF]
12969
12893
-
Val
GAC
[ENA]
¡û
>W1710527957
FNLN01000021
Betaproteobacteria
Nitrosomonas ureae [FNLN]
15948
16024
+
Val
GAC
[ENA]
¡û
>W1710529480
FNNZ01000029
Gammaproteobacteria
Thiocapsa roseopersicina [FNNZ]
30684
30760
+
Val
GAC
[ENA]
¡û
>W1710530608
FNOW01000037
Gammaproteobacteria
Allochromatium warmingii [FNOW]
9649
9573
-
Val
GAC
[ENA]
¡û
>W1710551233
FOFX01000049
Betaproteobacteria
Nitrosomonas ureae [FOFX]
15572
15648
+
Val
GAC
[ENA]
¡û
>W1710607983
FXAM01000001
Gammaproteobacteria
Methylomagnum ishizawai 175 [FXAM]
2435611
2435687
+
Val
GAC
[ENA]
¡û
>W1710766775
LIPU01000013
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
8319
8243
-
Val
GAC
[ENA]
¡û
>W1710768475
LIRD01000002
Gammaproteobacteria
Pseudomonas nunensis In5 [LIRD]
2437629
2437553
-
Val
GAC
[ENA]
¡û
Identical group No.276463 (55 seq.)
>W1711394653
MEQN01000007
Betaproteobacteria
Betaproteobacteria bacterium RBG_16_58_11 [MEQN]
23257
23333
+
Val
GAC
[ENA]
¡û
>W1711394686
MEQO01000022
Betaproteobacteria
Betaproteobacteria bacterium RBG_16_64_18 [MEQO]
7694
7770
+
Val
GAC
[ENA]
¡û
>W1711583422
MNXE01000033
Hydrogenophilia
Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE]
106844
106768
-
Val
GAC
[ENA]
¡û
>W1711680580
MRWL01001175
Betaproteobacteria
Sulfuricella sp. BIN3 [MRWL]
744
668
-
Val
GAC
[ENA]
¡û
>WENV180284565
OBID01059799
[OBID] metagenome; sludge
384
308
-
Val
GAC
[ENA]
¢þ
>WENV180297581
OBJA01047298
[OBJA] soil metagenome; sediment, water from around vicinity
122
46
-
Val
GAC
[ENA]
¢þ
>WENV180372277
OBOI01051666
[OBOI] sediment metagenome; sediment
316
392
+
Val
GAC
[ENA]
¢þ
>WENV181184614
OEKM01000670
[OEKM] metagenome; 1998
3102
3026
-
Val
GAC
[ENA]
¢þ
>WENV181414785
OGCL01001361
[OGCL] hot springs metagenome; Hot spring water
641
565
-
Val
GAC
[ENA]
¢þ
>WENV183660445
ORJL010024523
[ORJL] groundwater metagenome; groundwater
420
496
+
Val
GAC
[ENA]
¢þ
>WENV183660818
ORJL010057640
[ORJL] groundwater metagenome; groundwater
313
389
+
Val
GAC
[ENA]
¢þ
>WENV183660850
ORJL010060955
[ORJL] groundwater metagenome; groundwater
65206
65282
+
Val
GAC
[ENA]
¢þ
>WENV183663292
ORJL010270477
[ORJL] groundwater metagenome; groundwater
609
533
-
Val
GAC
[ENA]
¢þ
>WENV183664970
ORJL010428195
[ORJL] groundwater metagenome; groundwater
498
574
+
Val
GAC
[ENA]
¢þ
>WENV183665621
ORJL010477020
[ORJL] groundwater metagenome; groundwater
1153
1229
+
Val
GAC
[ENA]
¢þ
>WENV183665893
ORJL010502007
[ORJL] groundwater metagenome; groundwater
5084
5160
+
Val
GAC
[ENA]
¢þ
>WENV183667919
ORJL010694570
[ORJL] groundwater metagenome; groundwater
798
874
+
Val
GAC
[ENA]
¢þ
>WENV183668608
ORJL010756492
[ORJL] groundwater metagenome; groundwater
21700
21624
-
Val
GAC
[ENA]
¢þ
>WENV183671548
ORJL011073958
[ORJL] groundwater metagenome; groundwater
356
432
+
Val
GAC
[ENA]
¢þ
>WENV183672716
ORJL011202977
[ORJL] groundwater metagenome; groundwater
63
139
+
Val
GAC
[ENA]
¢þ
>WENV183675137
ORJL011475585
[ORJL] groundwater metagenome; groundwater
141
65
-
Val
GAC
[ENA]
¢þ
>WENV183675246
ORJL011487748
[ORJL] groundwater metagenome; groundwater
636
712
+
Val
GAC
[ENA]
¢þ
>WENV183675854
ORJL011558754
[ORJL] groundwater metagenome; groundwater
997
1073
+
Val
GAC
[ENA]
¢þ
>WENV183676090
ORJL011587118
[ORJL] groundwater metagenome; groundwater
60769
60693
-
Val
GAC
[ENA]
¢þ
>WENV183677160
ORJL011718421
[ORJL] groundwater metagenome; groundwater
688
764
+
Val
GAC
[ENA]
¢þ
>WENV183677643
ORJL011781611
[ORJL] groundwater metagenome; groundwater
397
473
+
Val
GAC
[ENA]
¢þ
>WENV183677978
ORJL011820267
[ORJL] groundwater metagenome; groundwater
314
390
+
Val
GAC
[ENA]
¢þ
>WENV183679631
ORMF010088297
[ORMF] groundwater metagenome; groundwater
777
853
+
Val
GAC
[ENA]
¢þ
>WENV183680452
ORMF010183806
[ORMF] groundwater metagenome; groundwater
18276
18200
-
Val
GAC
[ENA]
¢þ
>WENV183680942
ORMF010241746
[ORMF] groundwater metagenome; groundwater
8801
8725
-
Val
GAC
[ENA]
¢þ
>WENV183682422
ORMF010435965
[ORMF] groundwater metagenome; groundwater
548
624
+
Val
GAC
[ENA]
¢þ
>WENV183683909
ORMF010637017
[ORMF] groundwater metagenome; groundwater
3654
3578
-
Val
GAC
[ENA]
¢þ
>WENV183684719
ORMF010748136
[ORMF] groundwater metagenome; groundwater
12903
12827
-
Val
GAC
[ENA]
¢þ
>WENV183684905
ORMF010773565
[ORMF] groundwater metagenome; groundwater
22
98
+
Val
GAC
[ENA]
¢þ
>WENV183689421
ORMF011436181
[ORMF] groundwater metagenome; groundwater
1739
1663
-
Val
GAC
[ENA]
¢þ
>WENV183690527
ORMF011611052
[ORMF] groundwater metagenome; groundwater
803
879
+
Val
GAC
[ENA]
¢þ
>WENV183692670
ORMF011956054
[ORMF] groundwater metagenome; groundwater
1528
1604
+
Val
GAC
[ENA]
¢þ
>WENV183693507
ORMF012091543
[ORMF] groundwater metagenome; groundwater
552
628
+
Val
GAC
[ENA]
¢þ
>WENV183694770
ORMF012287411
[ORMF] groundwater metagenome; groundwater
6919
6995
+
Val
GAC
[ENA]
¢þ
>WENV183696278
ORMF012531391
[ORMF] groundwater metagenome; groundwater
272
348
+
Val
GAC
[ENA]
¢þ
>WENV170714439
LNFM01074032
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1752
1828
+
Val
GAC
[ENA]
¢þ
>C191004333
AP018721
Betaproteobacteria
Sulfuritortus calidifontis J1A [AP018721]
1026239
1026315
+
Val
GAC
-
¡û
>W1910699119
MEQX01000064
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_63_19 [MEQX]
41378
41302
-
Val
GAC
[ENA]
¡û
>W1910699167
MEQZ01000141
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_65_20 [MEQZ]
7588
7664
+
Val
GAC
[ENA]
¡û
>W1910699466
MERJ01000231
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_63_13 [MERJ]
6639
6715
+
Val
GAC
[ENA]
¡û
>W1910699494
MERK01000166
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23 [MERK]
41402
41478
+
Val
GAC
[ENA]
¡û
>W1910699517
MERL01000159
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_110 [MERL]
7619
7695
+
Val
GAC
[ENA]
¡û
>W1810463655
PZZS01000018
Betaproteobacteria
Nitrosomonas nitrosa Nm91 [PZZS]
31409
31485
+
Val
GAC
[ENA]
¡û
>W1810477109
QAOO01000004
Betaproteobacteria
Nitrosomonas nitrosa Nm90 [QAOO]
160102
160178
+
Val
GAC
[ENA]
¡û
>C151082859
CP011451
Betaproteobacteria
Nitrosomonas communis Nm2 [CP011451]
3662612
3662688
+
Val
GAC
[Ensembl]
¡û
>W1710528544
FNNH01000029
Betaproteobacteria
Nitrosomonas communis [FNNH]
18647
18723
+
Val
GAC
[ENA]
¡û
>W1710531188
FNPJ01000012
Betaproteobacteria
Nitrosomonas sp. Nm33 [FNPJ]
19832
19756
-
Val
GAC
[ENA]
¡û
>W1710565313
FORD01000035
Betaproteobacteria
Nitrosomonas sp. Nm34 [FORD]
836
760
-
Val
GAC
[ENA]
¡û
>W1710569043
FOUB01000024
Betaproteobacteria
Nitrosomonas communis [FOUB]
33813
33737
-
Val
GAC
[ENA]
¡û
>W1710569220
FOUF01000016
Betaproteobacteria
Nitrosomonas nitrosa [FOUF]
18049
17973
-
Val
GAC
[ENA]
¡û
Identical group No.276825 (15 seq.)
>W1711414514
MGZO01000094
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
52504
52580
+
Val
GAC
[ENA]
¡û
>W1711581690
MNUL01000012
Betaproteobacteria
Comamonadaceae bacterium CG1_02_60_18 [MNUL]
20697
20773
+
Val
GAC
[ENA]
¡û
>W131215843
ATVI01000005
Gammaproteobacteria
Nevskia ramosa DSM 11499 [ATVI]
638246
638170
-
Val
GAC
[ENA]
¡û
>WENV181188286
OEOE01069932
[OEOE] activated sludge metagenome; Activated Sludge
139
215
+
Val
GAC
[ENA]
¢þ
>WENV181190715
OEPS010001590
[OEPS] soil metagenome; soil
5302
5226
-
Val
GAC
[ENA]
¢þ
>WENV181322632
OFKT01007370
[OFKT] marine metagenome; sea ice
598
674
+
Val
GAC
[ENA]
¢þ
>WENV183703229
PDVJ01006165
[PDVJ] alkali sediment metagenome; glacial lake sediment
2797
2721
-
Val
GAC
[ENA]
¢þ
>WENV170556557
CXWL01010367
[CXWL] groundwater metagenome; biofilm material
13821
13897
+
Val
GAC
[ENA]
¢þ
>WENV170712550
LNFM01014724
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
8453
8529
+
Val
GAC
[ENA]
¢þ
>WENV170715134
LNFM01138076
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1555
1631
+
Val
GAC
[ENA]
¢þ
>SRA1002998
SRR002326.145447
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
53
129
+
Val
GAC
[SRA]
>SRA1003644
SRR002327.90251
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
153
229
+
Val
GAC
[SRA]
>SRA1003808
SRR002327.195134
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
212
136
-
Val
GAC
[SRA]
>W1610593885
LDUG01000033
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
106617
106541
-
Val
GAC
[ENA]
¡û
>W1710713360
LDUG01000033
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
106617
106541
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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