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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = GAG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.173098 (1 seq.)
>W1711583433
MNXE01000056
Hydrogenophilia
Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE]
23852
23767
-
Leu
GAG
[ENA]
¡û
Identical group No.181051 (2 seq.)
>W1711414499
MGZO01000024
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
5175
5091
-
Leu
GAG
[ENA]
¡û
>WENV170668379
LADL02003421
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
2450
2534
+
Leu
GAG
[ENA]
¢þ
Identical group No.201495 (4 seq.)
>W131225587
AUDR01000018
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
35461
35377
-
Leu
GAG
[ENA]
¡û
>W1510741371
CYHH01000005
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
108061
108145
+
Leu
GAG
[ENA]
¡û
>W1610632372
LIPU01000005
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
108061
108145
+
Leu
GAG
[ENA]
¡û
>W1710766758
LIPU01000005
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
108061
108145
+
Leu
GAG
[ENA]
¡û
Identical group No.202762 (1 seq.)
>C191003449
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
1257190
1257106
-
Leu
GAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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