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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = GCT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8336 (8 seq.)
>W131168089
ARDU01000008
Betaproteobacteria
Thiobacillus thioparus DSM 505 [ARDU]
132340
132247
-
Ser
GCT
[ENA]
¡û
>W1711414516
MGZO01000094
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
71725
71632
-
Ser
GCT
[ENA]
¡û
>W1711506562
MKWN01000004
Betaproteobacteria
Thiobacillus sp. 65-29 [MKWN]
2673
2580
-
Ser
GCT
[ENA]
¡û
>WENV180310949
OBJT01065424
[OBJT] soil metagenome; soil
493
400
-
Ser
GCT
[ENA]
¢þ
>WENV181190830
OEPS010004081
[OEPS] soil metagenome; soil
1886
1793
-
Ser
GCT
[ENA]
¢þ
>WENV181231547
OFEK01036213
[OFEK] activated sludge metagenome; Anaerobic digester
932
839
-
Ser
GCT
[ENA]
¢þ
>W1610593889
LDUG01000036
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
170416
170323
-
Ser
GCT
[ENA]
¡û
>W1710713364
LDUG01000036
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
170416
170323
-
Ser
GCT
[ENA]
¡û
Identical group No.9783 (4 seq.)
>C181043008
CP020026
Betaproteobacteria
Rhodocyclaceae bacterium Thauera-like [CP020026]
1927585
1927492
-
Ser
GCT
-
¡û
>C181165173
CP028425
Betaproteobacteria
Zoogloeaceae bacteirum Par-f-2 [CP028425]
1818849
1818756
-
Ser
GCT
-
¡û
>C181176790
CP029331
Betaproteobacteria
Thauera hydrothermalis GD-2 [CP029331]
1163964
1164057
+
Ser
GCT
-
¡û
>C191003448
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
1446070
1445977
-
Ser
GCT
-
¡û
Identical group No.10296 (9 seq.)
>W1711386444
MEFJ01000068
Betaproteobacteria
Thiobacillus sp. SCN 64-35 [MEFJ]
92
1
-
Ser
GCT
[ENA]
¡û
>W1711387322
MEGN01000003
Betaproteobacteria
Thiobacillus sp. SCN 65-179 [MEGN]
390714
390807
+
Ser
GCT
[ENA]
¡û
>W1711387407
MEGP01000033
Betaproteobacteria
Thiobacillus sp. SCN 63-57 [MEGP]
34417
34508
+
Ser
GCT
[ENA]
¡û
>W1711414474
MGZN01000072
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYA1_FULL_63_33 [MGZN]
2979
3072
+
Ser
GCT
[ENA]
¡û
>W1711504025
MKUE01000005
Betaproteobacteria
Thiobacillus sp. 65-1059 [MKUE]
49000
49093
+
Ser
GCT
[ENA]
¡û
>W1711504079
MKUF01000010
Betaproteobacteria
Thiobacillus sp. 65-69 [MKUF]
390258
390351
+
Ser
GCT
[ENA]
¡û
>W1711506516
MKWL01000023
Betaproteobacteria
Thiobacillus sp. 0-1251 [MKWL]
123133
123040
-
Ser
GCT
[ENA]
¡û
>W131160289
AQWL01000011
Betaproteobacteria
Thiobacillus denitrificans DSM 12475 [AQWL]
60324
60417
+
Ser
GCT
[ENA]
¡û
>WENV170670530
LAHT01034134
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
1449
1542
+
Ser
GCT
[ENA]
¢þ
Identical group No.10328 (4 seq.)
>W131225560
AUDR01000014
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
22057
22150
+
Ser
GCT
[ENA]
¡û
>W1510741360
CYHH01000002
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
5214
5307
+
Ser
GCT
[ENA]
¡û
>W1610632361
LIPU01000002
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
5214
5307
+
Ser
GCT
[ENA]
¡û
>W1710766747
LIPU01000002
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
5214
5307
+
Ser
GCT
[ENA]
¡û
Identical group No.17874 (1 seq.)
>W1711583439
MNXE01000063
Hydrogenophilia
Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE]
20539
20447
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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