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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = GGA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.30783 (11 seq.)
>W1711049904
LRRD01000014
Betaproteobacteria
Ferrovum myxofaciens Z-31 [LRRD]
6380
6470
+
Ser
GGA
[ENA]
¡û
>W1711394681
MEQN01000146
Betaproteobacteria
Betaproteobacteria bacterium RBG_16_58_11 [MEQN]
4653
4563
-
Ser
GGA
[ENA]
¡û
>W1711414522
MGZO01000106
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
47174
47084
-
Ser
GGA
[ENA]
¡û
>W1711423797
MIDJ01000095
Betaproteobacteria
Thiobacillus sp. GWE1_62_9 [MIDJ]
8043
8133
+
Ser
GGA
[ENA]
¡û
>W1711583435
MNXE01000057
Hydrogenophilia
Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE]
23817
23727
-
Ser
GGA
[ENA]
¡û
>WENV181190713
OEPS010001500
[OEPS] soil metagenome; soil
2783
2693
-
Ser
GGA
[ENA]
¢þ
>WENV181205615
OESW01000003
[OESW] metagenome; underground water
8911
8821
-
Ser
GGA
[ENA]
¢þ
>WENV170668408
LADL02003552
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
2757
2847
+
Ser
GGA
[ENA]
¢þ
>W141807644
JPOQ01000041
Betaproteobacteria
Ferrovum myxofaciens [JPOQ]
1175
1085
-
Ser
GGA
[ENA]
¡û
>W1910126437
BGOW01000033
Betaproteobacteria
Sulfuriferula multivorans TTN [BGOW]
117254
117344
+
Ser
GGA
[ENA]
¡û
>W1610891033
LRRD01000014
Betaproteobacteria
Ferrovum myxofaciens Z-31 [LRRD]
6380
6470
+
Ser
GGA
[ENA]
¡û
Identical group No.39142 (4 seq.)
>W131225590
AUDR01000019
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
34793
34703
-
Ser
GGA
[ENA]
¡û
>W1510741384
CYHH01000011
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
22062
22152
+
Ser
GGA
[ENA]
¡û
>W1610632385
LIPU01000011
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
22062
22152
+
Ser
GGA
[ENA]
¡û
>W1710766771
LIPU01000011
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
22062
22152
+
Ser
GGA
[ENA]
¡û
Identical group No.39667 (1 seq.)
>C191003419
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
743595
743685
+
Ser
GGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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