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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = GGG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276826 (5 seq.)
>W1711414515
MGZO01000094
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
60194
60270
+
Pro
GGG
[ENA]
¡û
>WENV181191185
OEPS010034602
[OEPS] soil metagenome; soil
888
812
-
Pro
GGG
[ENA]
¢þ
>WENV183516583
OMKS01212003
[OMKS] sediment metagenome; hot spring sediment
493
417
-
Pro
GGG
[ENA]
¢þ
>W1610593886
LDUG01000033
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
98748
98672
-
Pro
GGG
[ENA]
¡û
>W1710713361
LDUG01000033
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
98748
98672
-
Pro
GGG
[ENA]
¡û
Identical group No.287609 (45 seq.)
>W1711387325
MEGN01000003
Betaproteobacteria
Thiobacillus sp. SCN 65-179 [MEGN]
337116
337040
-
Pro
GGG
[ENA]
¡û
>W1711387377
MEGO01000075
Betaproteobacteria
Thiobacillus sp. SCN 64-317 [MEGO]
9670
9594
-
Pro
GGG
[ENA]
¡û
>W1711387388
MEGP01000008
Betaproteobacteria
Thiobacillus sp. SCN 63-57 [MEGP]
53948
53872
-
Pro
GGG
[ENA]
¡û
>W1711414487
MGZN01000543
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYA1_FULL_63_33 [MGZN]
1321
1397
+
Pro
GGG
[ENA]
¡û
>W1711423798
MIDJ01000100
Betaproteobacteria
Thiobacillus sp. GWE1_62_9 [MIDJ]
4194
4118
-
Pro
GGG
[ENA]
¡û
>W1711504082
MKUF01000010
Betaproteobacteria
Thiobacillus sp. 65-69 [MKUF]
336610
336534
-
Pro
GGG
[ENA]
¡û
>W1711506488
MKWL01000002
Betaproteobacteria
Thiobacillus sp. 0-1251 [MKWL]
250453
250377
-
Pro
GGG
[ENA]
¡û
>W1711506546
MKWM01000041
Betaproteobacteria
Thiobacillus sp. 63-78 [MKWM]
7981
8057
+
Pro
GGG
[ENA]
¡û
>W1711506568
MKWN01000013
Betaproteobacteria
Thiobacillus sp. 65-29 [MKWN]
11646
11722
+
Pro
GGG
[ENA]
¡û
>W1711583885
MNXU01000025
Betaproteobacteria
Betaproteobacteria bacterium CG2_30_68_42 [MNXU]
32269
32345
+
Pro
GGG
[ENA]
¡û
>W1711747624
MUKT01000025
Betaproteobacteria
Chromobacterium haemolyticum [MUKT]
3333
3257
-
Pro
GGG
[ENA]
¡û
>W1711747668
MUKU01000008
Betaproteobacteria
Chromobacterium haemolyticum [MUKU]
119949
119873
-
Pro
GGG
[ENA]
¡û
>W1711747778
MUKV01000024
Betaproteobacteria
Chromobacterium haemolyticum [MUKV]
67043
67119
+
Pro
GGG
[ENA]
¡û
>W131052449
AMYZ01000001
Betaproteobacteria
beta proteobacterium L13 [AMYZ]
137602
137678
+
Pro
GGG
[ENA]
¡û
>W131168082
ARDU01000004
Betaproteobacteria
Thiobacillus thioparus DSM 505 [ARDU]
20622
20698
+
Pro
GGG
[ENA]
¡û
>W131174781
ARIS01000079
Betaproteobacteria
Thiomonas sp. FB-6 [ARIS]
148528
148604
+
Pro
GGG
[ENA]
¡û
>C025389
CP000116
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [CP000116]
1083358
1083434
+
Pro
GGG
[Ensembl]
¡û
>WENV180297053
OBJA01008641
[OBJA] soil metagenome; sediment, water from around vicinity
2611
2535
-
Pro
GGG
[ENA]
¢þ
>WENV180311340
OBJT01233369
[OBJT] soil metagenome; soil
85
161
+
Pro
GGG
[ENA]
¢þ
>WENV180354238
OBLQ011518933
[OBLQ] soil metagenome; soil
174
98
-
Pro
GGG
[ENA]
¢þ
>WENV181145508
OEHO01329537
[OEHO] metagenome; unknown
142
66
-
Pro
GGG
[ENA]
¢þ
>WENV181167151
OEIU01010860
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
609
533
-
Pro
GGG
[ENA]
¢þ
>WENV181188890
OEOE01451485
[OEOE] activated sludge metagenome; Activated Sludge
208
132
-
Pro
GGG
[ENA]
¢þ
>WENV181191616
OEPS010139374
[OEPS] soil metagenome; soil
369
445
+
Pro
GGG
[ENA]
¢þ
>WENV181312246
OFJB01061671
[OFJB] sludge metagenome; sludge
237
161
-
Pro
GGG
[ENA]
¢þ
>WENV181414522
OGCL01000574
[OGCL] hot springs metagenome; Hot spring water
158
234
+
Pro
GGG
[ENA]
¢þ
>WENV181415121
OGCL01004380
[OGCL] hot springs metagenome; Hot spring water
1
77
+
Pro
GGG
[ENA]
¢þ
>WENV183703744
PDVJ01040272
[PDVJ] alkali sediment metagenome; glacial lake sediment
446
522
+
Pro
GGG
[ENA]
¢þ
>WENV183703896
PDVJ01064477
[PDVJ] alkali sediment metagenome; glacial lake sediment
98
22
-
Pro
GGG
[ENA]
¢þ
>WENV170651690
JRYG01000513
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
29909
29985
+
Pro
GGG
[ENA]
¢þ
>C191004334
AP018721
Betaproteobacteria
Sulfuritortus calidifontis J1A [AP018721]
1034797
1034873
+
Pro
GGG
-
¡û
>C191083677
CP031968
Betaproteobacteria
Chromobacterium rhizoryzae JP2-74 [CP031968]
1464707
1464783
+
Pro
GGG
-
¡û
>W09101570
AAFH01000001
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [AAFH]
818848
818772
-
Pro
GGG
[ENA]
¡û
>W141778937
JONK01000006
Betaproteobacteria
Chromobacterium haemolyticum DSM 19808 [JONK]
65693
65617
-
Pro
GGG
[ENA]
¡û
>W1910647333
LXRL01000092
Betaproteobacteria
Chromobacterium haemolyticum IR17 [LXRL]
9337
9261
-
Pro
GGG
[ENA]
¡û
>W1810483073
QARW01000002
Betaproteobacteria
Chromobacterium haemolyticum NRRL B-11053 [QARW]
1245895
1245971
+
Pro
GGG
[ENA]
¡û
>W1810483174
QARX01000001
Betaproteobacteria
Chromobacterium sp. Panama [QARX]
3398452
3398376
-
Pro
GGG
[ENA]
¡û
>W1510741288
CYHF01000008
Betaproteobacteria
Thiomonas bhubaneswarensis DSM 18181 [CYHF]
27130
27206
+
Pro
GGG
[ENA]
¡û
>W1511344552
JRFR01000013
Betaproteobacteria
Chromobacterium haemolyticum T124 [JRFR]
135702
135626
-
Pro
GGG
[ENA]
¡û
>W1511640552
LDUI01000001
Betaproteobacteria
Chromobacterium sp. LK1 [LDUI]
211313
211389
+
Pro
GGG
[ENA]
¡û
>W1511641281
LDUR01000014
Betaproteobacteria
Chromobacterium sp. LK11 [LDUR]
107560
107484
-
Pro
GGG
[ENA]
¡û
>W11187332
CAEE01000836
Betaproteobacteria
Chromobacterium haemolyticum C-61 [CAEE]
21805
21881
+
Pro
GGG
[ENA]
¡û
>W121126967
CAEE01000836
Betaproteobacteria
Chromobacterium haemolyticum C-61 [CAEE]
21805
21881
+
Pro
GGG
[ENA]
¡û
>W1610632429
LIPV01000008
Betaproteobacteria
Thiomonas bhubaneswarensis [LIPV]
27130
27206
+
Pro
GGG
[ENA]
¡û
>W1710766815
LIPV01000008
Betaproteobacteria
Thiomonas bhubaneswarensis [LIPV]
27130
27206
+
Pro
GGG
[ENA]
¡û
Identical group No.318297 (6 seq.)
>W131225577
AUDR01000015
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
136131
136055
-
Pro
GGG
[ENA]
¡û
>WENV170651628
JRYG01000021
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
41543
41467
-
Pro
GGG
[ENA]
¢þ
>WENV170653525
JRYJ01004200
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
7204
7128
-
Pro
GGG
[ENA]
¢þ
>W1510741380
CYHH01000008
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
71232
71308
+
Pro
GGG
[ENA]
¡û
>W1610632381
LIPU01000008
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
71232
71308
+
Pro
GGG
[ENA]
¡û
>W1710766767
LIPU01000008
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
71232
71308
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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