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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = GGT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.721614 (5 seq.)
>W131225573
AUDR01000015
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
277935
277861
-
Thr
GGT
[ENA]
¡û
>C191003412
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
412372
412446
+
Thr
GGT
-
¡û
>W1510741370
CYHH01000005
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
25815
25889
+
Thr
GGT
[ENA]
¡û
>W1610632371
LIPU01000005
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
25815
25889
+
Thr
GGT
[ENA]
¡û
>W1710766757
LIPU01000005
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
25815
25889
+
Thr
GGT
[ENA]
¡û
Identical group No.781055 (3 seq.)
>W1711414493
MGZO01000003
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
1069
1140
+
Thr
GGT
[ENA]
¡û
>W1511614844
LCMD01000024
Unclassified
Microgenomates group bacterium GW2011_GWC1_46_20 GW2011_GWC1_46_20 [LCMD]
16933
16862
-
Thr
GGT
[ENA]
¡û
>W1511616343
LCOA01000019
Unclassified
Candidatus Amesbacteria bacterium GW2011_GWA1_47_20 bacterium GW2011_GWA1_47_20 [LCOA]
591
662
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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