This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = GTA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154402 (3 seq.)
>W1711414492
MGZO01000003
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
982
1067
+
Tyr
GTA
[ENA]
¡û
>W1511614843
LCMD01000024
Unclassified
Microgenomates group bacterium GW2011_GWC1_46_20 GW2011_GWC1_46_20 [LCMD]
17020
16935
-
Tyr
GTA
[ENA]
¡û
>W1511616342
LCOA01000019
Unclassified
Candidatus Amesbacteria bacterium GW2011_GWA1_47_20 bacterium GW2011_GWA1_47_20 [LCOA]
504
589
+
Tyr
GTA
[ENA]
¡û
Identical group No.180961 (24 seq.)
>W1711210179
LXHZ01000007
Gammaproteobacteria
Rappaport israeli B08008 [LXHZ]
20444
20528
+
Tyr
GTA
[ENA]
¡û
>W131225571
AUDR01000015
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
278135
278054
-
Tyr
GTA
[ENA]
¡û
>WENV180090415
MPMF02138569
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
253
337
+
Tyr
GTA
[ENA]
¢þ
>WENV180364713
OBOA01091852
[OBOA] marine metagenome; Deep Chlorophyll Maximum
249
165
-
Tyr
GTA
[ENA]
¢þ
>WENV180727681
ODGU01009559
[ODGU] human metagenome; G_DNA_Supragingival plaque
2200
2116
-
Tyr
GTA
[ENA]
¢þ
>WENV180788353
ODIS01052412
[ODIS] human metagenome; G_DNA_Supragingival plaque
513
597
+
Tyr
GTA
[ENA]
¢þ
>WENV180797204
ODJB01035981
[ODJB] human metagenome; G_DNA_Supragingival plaque
477
561
+
Tyr
GTA
[ENA]
¢þ
>WENV180813977
ODJO01004403
[ODJO] human metagenome; G_DNA_Supragingival plaque
2373
2457
+
Tyr
GTA
[ENA]
¢þ
>WENV180832308
ODKC01001085
[ODKC] human metagenome; G_DNA_Supragingival plaque
15667
15583
-
Tyr
GTA
[ENA]
¢þ
>WENV180943461
ODUC01000557
[ODUC] human metagenome; G_DNA_Supragingival plaque
21245
21329
+
Tyr
GTA
[ENA]
¢þ
>WENV180976676
ODUY01194588
[ODUY] human metagenome; G_DNA_Supragingival plaque
210
126
-
Tyr
GTA
[ENA]
¢þ
>WENV181137727
OEGJ01017551
[OEGJ] human metagenome; G_DNA_Supragingival plaque
352
268
-
Tyr
GTA
[ENA]
¢þ
>WENV181182385
OEJV01008105
[OEJV] human metagenome; G_DNA_Supragingival plaque
1530
1614
+
Tyr
GTA
[ENA]
¢þ
>WENV170477401
CEVJ01069593
[CEVJ] marine metagenome genome assembly TARA_146_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
138
54
-
Tyr
GTA
[ENA]
¢þ
>WENV170580648
FUFK010048984
[FUFK] metagenome; unknown
6865
6947
+
Tyr
GTA
[ENA]
¢þ
>WENV170800912
MDSV01238266
[MDSV] marine metagenome; seawater
206
124
-
Tyr
GTA
[ENA]
¢þ
>WENV170838678
MDSZ01172236
[MDSZ] marine metagenome; seawater
165
83
-
Tyr
GTA
[ENA]
¢þ
>WENV170857485
MDTB01009428
[MDTB] marine metagenome; seawater
92381
92299
-
Tyr
GTA
[ENA]
¢þ
>WENV170893740
MDTD01055932
[MDTD] marine metagenome; seawater
1396
1314
-
Tyr
GTA
[ENA]
¢þ
>C191003410
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
412168
412252
+
Tyr
GTA
-
¡û
>W1510741368
CYHH01000005
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
25615
25696
+
Tyr
GTA
[ENA]
¡û
>W121008591
AGCM01000032
Gammaproteobacteria
Cardiobacterium valvarum F0432 [AGCM]
2604
2688
+
Tyr
GTA
[ENA]
¡û
>W1610632369
LIPU01000005
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
25615
25696
+
Tyr
GTA
[ENA]
¡û
>W1710766755
LIPU01000005
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
25615
25696
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK