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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = GTG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456375 (23 seq.)
>W1711414498
MGZO01000020
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
31794
31719
-
His
GTG
[ENA]
¡û
>C171083827
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
2454419
2454494
+
His
GTG
-
¡û
>C171094239
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
2356423
2356498
+
His
GTG
-
¡û
>WENV180252619
OBEQ010464439
[OBEQ] groundwater metagenome; groundwater
3951
3876
-
His
GTG
[ENA]
¢þ
>WENV180829463
ODKA01184070
[ODKA] human metagenome; G_DNA_Stool
10
85
+
His
GTG
[ENA]
¢þ
>WENV181089864
OEBA01127857
[OEBA] human metagenome; G_DNA_Stool
60
135
+
His
GTG
[ENA]
¢þ
>WENV181190995
OEPS010012601
[OEPS] soil metagenome; soil
1317
1392
+
His
GTG
[ENA]
¢þ
>WENV181883107
OGXI01001763
[OGXI] human gut metagenome; faeces
11843
11918
+
His
GTG
[ENA]
¢þ
>WENV181915960
OGYF01029154
[OGYF] human gut metagenome; faeces
1265
1340
+
His
GTG
[ENA]
¢þ
>WENV181929606
OGYO01040422
[OGYO] human gut metagenome; faeces
689
764
+
His
GTG
[ENA]
¢þ
>WENV181973144
OHAA01013279
[OHAA] human gut metagenome; faeces
825
750
-
His
GTG
[ENA]
¢þ
>WENV181998413
OHAU01077081
[OHAU] human gut metagenome; faeces
47
122
+
His
GTG
[ENA]
¢þ
>WENV183086180
OLJF01025016
[OLJF] metagenome; faeces
1246
1321
+
His
GTG
[ENA]
¢þ
>WENV183131406
OLOA01037315
[OLOA] human gut metagenome; faeces
229
154
-
His
GTG
[ENA]
¢þ
>WENV183330798
OLWB01023196
[OLWB] human gut metagenome; faeces
1961
2036
+
His
GTG
[ENA]
¢þ
>WENV170055896
CDZF01026127
[CDZF] gut metagenome; human stools
492
417
-
His
GTG
[ENA]
¢þ
>WENV170069633
CDZP01050694
[CDZP] gut metagenome; human stools
384
459
+
His
GTG
[ENA]
¢þ
>WENV170071094
CDZQ01045701
[CDZQ] gut metagenome; human stools
3981
3906
-
His
GTG
[ENA]
¢þ
>WENV170110935
CECF01051745
[CECF] gut metagenome; human stools
80
5
-
His
GTG
[ENA]
¢þ
>W09119228
ACDP01000055
Betaproteobacteria
Oxalobacter paraformigenes HOxBLS [ACDP]
4006
3931
-
His
GTG
[ENA]
¡û
>W09119230
ACDQ01000001
Betaproteobacteria
Oxalobacter formigenes OXCC13 [ACDQ]
9507
9432
-
His
GTG
[ENA]
¡û
>W1610593898
LDUG01000048
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
29052
28977
-
His
GTG
[ENA]
¡û
>W1710713373
LDUG01000048
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
29052
28977
-
His
GTG
[ENA]
¡û
Identical group No.565031 (5 seq.)
>W131225582
AUDR01000016
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
144919
144844
-
His
GTG
[ENA]
¡û
>C191003427
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
908915
908990
+
His
GTG
-
¡û
>W1510741375
CYHH01000006
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
22405
22480
+
His
GTG
[ENA]
¡û
>W1610632376
LIPU01000006
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
22405
22480
+
His
GTG
[ENA]
¡û
>W1710766762
LIPU01000006
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
22405
22480
+
His
GTG
[ENA]
¡û
Identical group No.603675 (1 seq.)
>W1711583415
MNXE01000017
Hydrogenophilia
Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE]
3226
3151
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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