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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = TAA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81059 (1 seq.)
>C191003451
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
771210
771122
-
Leu
TAA
-
¡û
Identical group No.113445 (2 seq.)
>W1711414483
MGZN01000310
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYA1_FULL_63_33 [MGZN]
1626
1540
-
Leu
TAA
[ENA]
¡û
>W1711414525
MGZO01000118
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
10031
9945
-
Leu
TAA
[ENA]
¡û
Identical group No.188517 (2 seq.)
>W1711583412
MNXE01000014
Hydrogenophilia
Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE]
142454
142370
-
Leu
TAA
[ENA]
¡û
>WENV181291685
OFHC01001534
[OFHC] soil metagenome; Clay
771
855
+
Leu
TAA
[ENA]
¢þ
Identical group No.201484 (1 seq.)
>W131225567
AUDR01000015
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
152655
152739
+
Leu
TAA
[ENA]
¡û
Identical group No.208440 (3 seq.)
>W1510741381
CYHH01000008
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
52937
52853
-
Leu
TAA
[ENA]
¡û
>W1610632382
LIPU01000008
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
52937
52853
-
Leu
TAA
[ENA]
¡û
>W1710766768
LIPU01000008
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
52937
52853
-
Leu
TAA
[ENA]
¡û
Identical group No.208441 (3 seq.)
>W1510741392
CYHH01000015
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
31431
31346
-
Leu
TAA
[ENA]
¡û
>W1610632393
LIPU01000015
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
31431
31346
-
Leu
TAA
[ENA]
¡û
>W1710766779
LIPU01000015
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
31431
31346
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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