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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = TAC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458202 (1 seq.)
>W1711414512
MGZO01000091
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
33403
33328
-
Val
TAC
[ENA]
¡û
Identical group No.464197 (60 seq.)
>W1711583425
MNXE01000033
Hydrogenophilia
Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE]
23716
23641
-
Val
TAC
[ENA]
¡û
>W1711583859
MNXT01000291
Betaproteobacteria
Betaproteobacteria bacterium CG2_30_59_46 [MNXT]
6533
6608
+
Val
TAC
[ENA]
¡û
>C171089764
CP019169
Betaproteobacteria
Betaproteobacteria bacterium GR16-43 [CP019169]
2617757
2617832
+
Val
TAC
-
¡û
>W131155815
AQOW01000032
Gammaproteobacteria
Thioalkalivibrio sp. HL-Eb18 [AQOW]
121833
121908
+
Val
TAC
[ENA]
¡û
>W131156028
AQPB01000034
Gammaproteobacteria
Thioalkalivibrio sp. ALE6 [AQPB]
10395
10320
-
Val
TAC
[ENA]
¡û
>W131161351
AQXP01000046
Gammaproteobacteria
Thioalkalivibrio sp. ALJ11 [AQXP]
54061
53986
-
Val
TAC
[ENA]
¡û
>W131161709
AQXY01000021
Gammaproteobacteria
Thioalkalivibrio sp. ALE14 [AQXY]
10346
10271
-
Val
TAC
[ENA]
¡û
>W131161962
AQYE01000008
Gammaproteobacteria
Thioalkalivibrio sp. ALJ9 [AQYE]
258148
258223
+
Val
TAC
[ENA]
¡û
>W131170357
ARFM01000003
Gammaproteobacteria
Thioalkalivibrio versutus AL2 [ARFM]
349938
349863
-
Val
TAC
[ENA]
¡û
>W131173720
ARHW01000013
Gammaproteobacteria
Thioalkalivibrio sp. ALJ3 [ARHW]
53946
53871
-
Val
TAC
[ENA]
¡û
>W131173750
ARHX01000010
Gammaproteobacteria
Thioalkalivibrio sp. ALJ4 [ARHX]
152023
152098
+
Val
TAC
[ENA]
¡û
>W131173796
ARHY01000009
Gammaproteobacteria
Thioalkalivibrio sp. ALJ5 [ARHY]
349444
349369
-
Val
TAC
[ENA]
¡û
>W131173876
ARIA01000012
Gammaproteobacteria
Thioalkalivibrio sp. ALE25 [ARIA]
70274
70199
-
Val
TAC
[ENA]
¡û
>W131173940
ARIB01000014
Gammaproteobacteria
Thioalkalivibrio sp. ALJ10 [ARIB]
53973
53898
-
Val
TAC
[ENA]
¡û
>W131174008
ARID01000021
Gammaproteobacteria
Thioalkalivibrio sp. ALJ16 [ARID]
75316
75391
+
Val
TAC
[ENA]
¡û
>W131174107
ARIF01000012
Gammaproteobacteria
Thioalkalivibrio sp. ALJ8 [ARIF]
272019
271944
-
Val
TAC
[ENA]
¡û
>W131174138
ARIG01000009
Gammaproteobacteria
Thioalkalivibrio sp. ALE31 [ARIG]
51030
50955
-
Val
TAC
[ENA]
¡û
>W131174184
ARIH01000017
Gammaproteobacteria
Thioalkalivibrio sp. ALE28 [ARIH]
10500
10425
-
Val
TAC
[ENA]
¡û
>W131174240
ARII01000020
Gammaproteobacteria
Thioalkalivibrio sp. ALE9 [ARII]
70285
70210
-
Val
TAC
[ENA]
¡û
>W131174274
ARIJ01000013
Gammaproteobacteria
Thioalkalivibrio sp. ALE30 [ARIJ]
136780
136705
-
Val
TAC
[ENA]
¡û
>W131174345
ARIK01000024
Gammaproteobacteria
Thioalkalivibrio sp. ALE27 [ARIK]
214095
214020
-
Val
TAC
[ENA]
¡û
>W131175127
ARIZ01000026
Gammaproteobacteria
Thioalkalivibrio sp. ALJ24 [ARIZ]
111819
111894
+
Val
TAC
[ENA]
¡û
>W131175241
ARJC01000016
Gammaproteobacteria
Thioalkalivibrio sp. AKL11 [ARJC]
13151
13076
-
Val
TAC
[ENA]
¡û
>W131176323
ARJY01000014
Gammaproteobacteria
Thioalkalivibrio sp. ARh4 [ARJY]
232550
232475
-
Val
TAC
[ENA]
¡û
>W131176366
ARJZ01000009
Gammaproteobacteria
Thioalkalivibrio sp. ALgr1 [ARJZ]
557040
556965
-
Val
TAC
[ENA]
¡û
>W131176416
ARKA01000010
Gammaproteobacteria
Thioalkalivibrio sp. ALJ12 [ARKA]
1082547
1082622
+
Val
TAC
[ENA]
¡û
>W131176466
ARKB01000014
Gammaproteobacteria
Thioalkalivibrio sp. ALJ2 [ARKB]
806253
806328
+
Val
TAC
[ENA]
¡û
>W131177064
ARKN01000004
Gammaproteobacteria
Thioalkalivibrio sp. AL5 [ARKN]
349444
349369
-
Val
TAC
[ENA]
¡û
>W131177099
ARKO01000001
Gammaproteobacteria
Thioalkalivibrio sp. ALJ20 [ARKO]
1026703
1026778
+
Val
TAC
[ENA]
¡û
>W131177178
ARKP01000002
Gammaproteobacteria
Thioalkalivibrio sp. ALJ21 [ARKP]
50782
50707
-
Val
TAC
[ENA]
¡û
>W131178055
ARLG01000023
Gammaproteobacteria
Thioalkalivibrio sp. ALE12 [ARLG]
85803
85728
-
Val
TAC
[ENA]
¡û
>W131178360
ARLN01000005
Gammaproteobacteria
Thioalkalivibrio sp. ALD1 [ARLN]
155513
155588
+
Val
TAC
[ENA]
¡û
>W131178511
ARLQ01000031
Gammaproteobacteria
Thioalkalivibrio sp. ALE16 [ARLQ]
50410
50335
-
Val
TAC
[ENA]
¡û
>W131178596
ARLR01000005
Gammaproteobacteria
Thioalkalivibrio sp. AL21 [ARLR]
145894
145969
+
Val
TAC
[ENA]
¡û
>W131178788
ARLV01000012
Gammaproteobacteria
Thioalkalivibrio sp. ALRh [ARLV]
50569
50494
-
Val
TAC
[ENA]
¡û
>W131178831
ARLW01000018
Gammaproteobacteria
Thioalkalivibrio sp. ALE22 [ARLW]
207478
207403
-
Val
TAC
[ENA]
¡û
>W131178907
ARLY01000013
Gammaproteobacteria
Thioalkalivibrio sp. ALgr5 [ARLY]
70342
70267
-
Val
TAC
[ENA]
¡û
>W131179710
ARMP01000023
Gammaproteobacteria
Thioalkalivibrio sp. ALJT [ARMP]
175180
175105
-
Val
TAC
[ENA]
¡û
>W131185587
ARTU01000011
Gammaproteobacteria
Thioalkalivibrio sp. ALJ15 [ARTU]
496989
496914
-
Val
TAC
[ENA]
¡û
>W131214709
ATUK01000012
Gammaproteobacteria
Thioalkalivibrio sp. AKL19 [ATUK]
130538
130463
-
Val
TAC
[ENA]
¡û
>W131225664
AUDT01000009
Gammaproteobacteria
Thioalkalivibrio sp. ALE17 [AUDT]
74924
74999
+
Val
TAC
[ENA]
¡û
>WENV180000130
CZVZ01002104
[CZVZ] metagenome; unknown
4756
4831
+
Val
TAC
[ENA]
¢þ
>WENV180296721
OBJA01001998
[OBJA] soil metagenome; sediment, water from around vicinity
5618
5543
-
Val
TAC
[ENA]
¢þ
>WENV180352062
OBLQ010158122
[OBLQ] soil metagenome; soil
662
737
+
Val
TAC
[ENA]
¢þ
>WENV183660212
ORJL010004804
[ORJL] groundwater metagenome; groundwater
290
215
-
Val
TAC
[ENA]
¢þ
>WENV183685450
ORMF010851501
[ORMF] groundwater metagenome; groundwater
549
624
+
Val
TAC
[ENA]
¢þ
>WENV183689586
ORMF011462583
[ORMF] groundwater metagenome; groundwater
87412
87487
+
Val
TAC
[ENA]
¢þ
>WENV183690429
ORMF011596190
[ORMF] groundwater metagenome; groundwater
6294
6369
+
Val
TAC
[ENA]
¢þ
>WENV170556065
CXWL01004504
[CXWL] groundwater metagenome; biofilm material
341
266
-
Val
TAC
[ENA]
¢þ
>WENV170557944
CXWL01043701
[CXWL] groundwater metagenome; biofilm material
174
99
-
Val
TAC
[ENA]
¢þ
>WENV170639444
JFJP01002817
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
6295
6220
-
Val
TAC
[ENA]
¢þ
>WENV170703182
LKMJ01007708
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2813
2888
+
Val
TAC
[ENA]
¢þ
>WENV170705789
LNAP01000303
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
47244
47169
-
Val
TAC
[ENA]
¢þ
>W09125861
ACIU01000002
Gammaproteobacteria
Thioalkalivibrio sp. K90mix [ACIU] K90mix [ACIU]
300579
300504
-
Val
TAC
[ENA]
¡û
>C191004289
AP018718
Betaproteobacteria
Sulfuricystis multivorans J5B [AP018718]
1280666
1280741
+
Val
TAC
-
¡û
>C191007518
AP019373
Betaproteobacteria
Sulfuricystis thermophila M52 [AP019373]
1247611
1247686
+
Val
TAC
-
¡û
>C10113285
CP001905
Gammaproteobacteria
Thioalkalivibrio sp. K90mix [CP001905]
609067
609142
+
Val
TAC
[Ensembl]
¡û
>WENV11100218
ADZX01000447
Sediment metagenome
3948
3873
-
Val
TAC
[ENA]
¡û
>W11168246
AFNV01000068
Gammaproteobacteria
Salinisphaera shabanensis E1L3A [AFNV]
8512
8587
+
Val
TAC
[ENA]
¡û
>W1710599747
FTPK01000001
Gammaproteobacteria
Ectothiorhodosinus mongolicus [FTPK]
717385
717310
-
Val
TAC
[ENA]
¡û
Identical group No.565202 (5 seq.)
>W131225583
AUDR01000016
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
113101
113026
-
Val
TAC
[ENA]
¡û
>C191003450
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
1190158
1190083
-
Val
TAC
-
¡û
>W1510741376
CYHH01000006
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
53596
53671
+
Val
TAC
[ENA]
¡û
>W1610632377
LIPU01000006
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
53596
53671
+
Val
TAC
[ENA]
¡û
>W1710766763
LIPU01000006
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
53596
53671
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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