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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = TAG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181052 (4 seq.)
>W1711387343
MEGN01000009
Betaproteobacteria
Thiobacillus sp. SCN 65-179 [MEGN]
38232
38148
-
Leu
TAG
[ENA]
¡û
>W1711414511
MGZO01000091
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
39797
39713
-
Leu
TAG
[ENA]
¡û
>W1711504070
MKUF01000006
Betaproteobacteria
Thiobacillus sp. 65-69 [MKUF]
116733
116817
+
Leu
TAG
[ENA]
¡û
>W1711583858
MNXT01000291
Betaproteobacteria
Betaproteobacteria bacterium CG2_30_59_46 [MNXT]
143
227
+
Leu
TAG
[ENA]
¡û
Identical group No.199587 (13 seq.)
>W1711387409
MEGP01000036
Betaproteobacteria
Thiobacillus sp. SCN 63-57 [MEGP]
30848
30932
+
Leu
TAG
[ENA]
¡û
>W1711414477
MGZN01000232
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYA1_FULL_63_33 [MGZN]
441
525
+
Leu
TAG
[ENA]
¡û
>W1711504044
MKUE01000095
Betaproteobacteria
Thiobacillus sp. 65-1059 [MKUE]
61321
61237
-
Leu
TAG
[ENA]
¡û
>W1711504129
MKUG01000124
Betaproteobacteria
Thiobacillus sp. 65-1402 [MKUG]
16811
16727
-
Leu
TAG
[ENA]
¡û
>W1711506513
MKWL01000023
Betaproteobacteria
Thiobacillus sp. 0-1251 [MKWL]
90476
90560
+
Leu
TAG
[ENA]
¡û
>W1711506571
MKWN01000023
Betaproteobacteria
Thiobacillus sp. 65-29 [MKWN]
236348
236264
-
Leu
TAG
[ENA]
¡û
>W131160282
AQWL01000008
Betaproteobacteria
Thiobacillus denitrificans DSM 12475 [AQWL]
49096
49012
-
Leu
TAG
[ENA]
¡û
>W131168086
ARDU01000008
Betaproteobacteria
Thiobacillus thioparus DSM 505 [ARDU]
84266
84350
+
Leu
TAG
[ENA]
¡û
>C025407
CP000116
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [CP000116]
1787491
1787407
-
Leu
TAG
[Ensembl]
¡û
>WENV180310920
OBJT01056092
[OBJT] soil metagenome; soil
337
421
+
Leu
TAG
[ENA]
¢þ
>WENV180350531
OBLQ010002308
[OBLQ] soil metagenome; soil
133
49
-
Leu
TAG
[ENA]
¢þ
>WENV180356339
OBNK01015063
[OBNK] sediment metagenome; sediment
367
283
-
Leu
TAG
[ENA]
¢þ
>W09101562
AAFH01000001
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [AAFH]
114715
114799
+
Leu
TAG
[ENA]
¡û
Identical group No.201483 (4 seq.)
>W131225558
AUDR01000013
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
368908
368992
+
Leu
TAG
[ENA]
¡û
>W1510741358
CYHH01000001
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
215938
216022
+
Leu
TAG
[ENA]
¡û
>W1610632359
LIPU01000001
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
215938
216022
+
Leu
TAG
[ENA]
¡û
>W1710766745
LIPU01000001
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
215938
216022
+
Leu
TAG
[ENA]
¡û
Identical group No.202761 (1 seq.)
>C191003446
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
1516364
1516280
-
Leu
TAG
-
¡û
Identical group No.208578 (1 seq.)
>W1711583424
MNXE01000033
Hydrogenophilia
Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE]
29949
29865
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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