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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = TCC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.799484 (12 seq.)
>W1711167008
LVVZ01000005
Alphaproteobacteria
Pseudovibrio exalbescens [LVVZ]
989
916
-
Gly
TCC
[ENA]
¡û
>W131225572
AUDR01000015
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
278023
277950
-
Gly
TCC
[ENA]
¡û
>W131229311
AUGS01000001
Alphaproteobacteria
Pseudovibrio exalbescens DSM 16456 [AUGS]
530473
530546
+
Gly
TCC
[ENA]
¡û
>C171098256
CP019697
Betaproteobacteria
Paenalcaligenes hominis 15S00501 [CP019697]
1636758
1636685
-
Gly
TCC
-
¡û
>WENV181835593
OGVI01004999
[OGVI] freshwater metagenome; freshwater
992
919
-
Gly
TCC
[ENA]
¢þ
>WENV170654906
JRYL01076589
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
451
524
+
Gly
TCC
[ENA]
¢þ
>WENV170687974
LFRM01220536
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
6959
6886
-
Gly
TCC
[ENA]
¢þ
>WENV170852992
MDTA01161162
[MDTA] marine metagenome; seawater
3331
3258
-
Gly
TCC
[ENA]
¢þ
>W1910989664
NKQT01000001
Alphaproteobacteria
Pseudovibrio exalbescens COD 22 [NKQT]
125148
125075
-
Gly
TCC
[ENA]
¡û
>W1510741369
CYHH01000005
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
25727
25800
+
Gly
TCC
[ENA]
¡û
>W1610632370
LIPU01000005
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
25727
25800
+
Gly
TCC
[ENA]
¡û
>W1710766756
LIPU01000005
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
25727
25800
+
Gly
TCC
[ENA]
¡û
Identical group No.812238 (1 seq.)
>C191003411
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
412283
412356
+
Gly
TCC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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