tRNA genes clustered and arranged according to each identical group

Hydrogenophilia

Anticodon = TCT

HIT: 4 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.270857 (64 seq.)
>W1710893299 LNEP01000005 Betaproteobacteria Betaproteobacteria bacterium Ga0077540 [LNEP] 42666 42590 - Arg TCT [ENA] ¡û
>W1711224663 LXUF01000011 Betaproteobacteria Methylovorus sp. MM2 MM1 [LXUF] 551215 551139 - Arg TCT [ENA] ¡û
>W1711414497 MGZO01000020 Hydrogenophilia Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO] 31899 31823 - Arg TCT [ENA] ¡û
>W1711680556 MRWL01000383 Betaproteobacteria Sulfuricella sp. BIN3 [MRWL] 872 948 + Arg TCT [ENA] ¡û
>C171116296 CP021138 Betaproteobacteria Sulfuriferula sp. AH1 [CP021138] 1996459 1996535 + Arg TCT - ¡û
>W131164749 ARBA01000003 Betaproteobacteria Methylotenera mobilis 13 [ARBA] 660226 660150 - Arg TCT [ENA] ¡û
>W131186395 ARWC01000001 Betaproteobacteria Methylotenera sp. 1P/1 [ARWC] 2049302 2049378 + Arg TCT [ENA] ¡û
>W131214596 ATUI01000001 Betaproteobacteria Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 [ATUI] 433 509 + Arg TCT [ENA] ¡û
>C013372 CP000284 Betaproteobacteria Methylobacillus flagellatus KT [CP000284] 80072 80148 + Arg TCT [Ensembl] ¡û
>WENV180099061 MTBK01284931 [MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge 1342 1418 + Arg TCT [ENA] ¢þ
>WENV180252618 OBEQ010464439 [OBEQ] groundwater metagenome; groundwater 4064 3988 - Arg TCT [ENA] ¢þ
>WENV180268760 OBEQ012000275 [OBEQ] groundwater metagenome; groundwater 607 683 + Arg TCT [ENA] ¢þ
>WENV181189050 OEOF01000037 [OEOF] activated sludge metagenome; Activated Sludge 13346 13422 + Arg TCT [ENA] ¢þ
>WENV181222620 OFDC01000032 [OFDC] hot springs metagenome; Water 185550 185474 - Arg TCT [ENA] ¢þ
>WENV181384225 OFRH01039095 [OFRH] wastewater metagenome; Exp Tend NO 100WW 225 301 + Arg TCT [ENA] ¢þ
>WENV181835512 OGVI01002081 [OGVI] freshwater metagenome; freshwater 487 563 + Arg TCT [ENA] ¢þ
>WENV181843210 OGVU01003267 [OGVU] freshwater metagenome; freshwater 195 271 + Arg TCT [ENA] ¢þ
>W141229542 BAMT01000006 Betaproteobacteria Methylobacillus glycogenes JCM 2850 [BAMT] 10780 10856 + Arg TCT [ENA] ¡û
>W141350136 JCKJ01000001 Betaproteobacteria Methylophilaceae bacterium 11 [JCKJ] 120219 120295 + Arg TCT [ENA] ¡û
>WENV183683922 ORMF010638506 [ORMF] groundwater metagenome; groundwater 90914 90838 - Arg TCT [ENA] ¢þ
>WENV183726884 PJTO01000354 [PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment 15541 15465 - Arg TCT [ENA] ¢þ
>WENV183729443 PJTQ01040042 [PJTQ] soil metagenome; Soil (3) enriched on wood chips 594 518 - Arg TCT [ENA] ¢þ
>WENV183736826 PJUD01000046 [PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment 186119 186043 - Arg TCT [ENA] ¢þ
>WENV183739359 PJUE01010561 [PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment 360 284 - Arg TCT [ENA] ¢þ
>WENV183740517 PJUF01003002 [PJUF] feces metagenome; Chicken feces (3) enriched on wood chips 2804 2880 + Arg TCT [ENA] ¢þ
>WENV170558763 CXWL01088777 [CXWL] groundwater metagenome; biofilm material 1877 1953 + Arg TCT [ENA] ¢þ
>WENV170577505 FSSH01000094 [FSSH] freshwater metagenome; drinking water 10769 10845 + Arg TCT [ENA] ¢þ
>WENV170705461 LNAO01000611 [LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 1400 1324 - Arg TCT [ENA] ¢þ
>WENV170705719 LNAP01000146 [LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 3946 4022 + Arg TCT [ENA] ¢þ
>WENV170706489 LNAP01003533 [LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 14913 14837 - Arg TCT [ENA] ¢þ
>WENV170708648 LNAP01100863 [LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 207 283 + Arg TCT [ENA] ¢þ
>WENV170710439 LNFM01001749 [LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant 10955 11031 + Arg TCT [ENA] ¢þ
>WENV170961611 MLJW01000232 [MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for 30749 30673 - Arg TCT [ENA] ¢þ
>WENV170961722 MLJW01000675 [MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for 7732 7656 - Arg TCT [ENA] ¢þ
>WENV022999 AACY020690357 Marine microbial communities from Global Ocean Sampling (GOS) 133 211 + Arg TCT [ENA]
>W09101014 AADX02000005 Betaproteobacteria Methylobacillus flagellatus KT [AADX] 156517 156441 - Arg TCT [ENA] ¡û
>W141819352 JQMG01000001 Betaproteobacteria Methylotenera sp. L2L1 [JQMG] 1091328 1091404 + Arg TCT [ENA] ¡û
>W1910015377 BDOQ01000003 Betaproteobacteria Novimethylophilus kurashikiensis La2-4 [BDOQ] 335497 335573 + Arg TCT [ENA] ¡û
>W1910126416 BGOW01000006 Betaproteobacteria Sulfuriferula multivorans TTN [BGOW] 77695 77619 - Arg TCT [ENA] ¡û
>W1910128282 BHGL01000002 Betaproteobacteria Sulfuriferula thiophila mst6 [BHGL] 3269 3193 - Arg TCT [ENA] ¡û
>C09107553 CP001674 Betaproteobacteria Methylovorus glucosotrophus SIP3-4 [CP001674] 90915 90991 + Arg TCT [Ensembl] ¡û
>C09107780 CP001672 Betaproteobacteria Methylotenera mobilis JLW8 [CP001672] 239476 239552 + Arg TCT [Ensembl] ¡û
>C141000195 AP013066 Betaproteobacteria Sulfuricella denitrificans skB26 [AP013066] 1427416 1427340 - Arg TCT [Ensembl] ¡û
>W1910547764 FZOA01000010 Betaproteobacteria Methylobacillus rhizosphaerae Ca-68 [FZOA] 10951 11027 + Arg TCT [ENA] ¡û
>W1910698918 MEQR01000049 Betaproteobacteria Betaproteobacteria bacterium RBG_19FT_COMBO_58_11 [MEQR] 13489 13413 - Arg TCT [ENA] ¡û
>W1910730012 MHBT01000090 Betaproteobacteria Methylophilales bacterium RIFCSPHIGHO2_02_FULL_57_10 [MHBT] 8877 8953 + Arg TCT [ENA] ¡û
>W1911623997 PQVH01000010 Betaproteobacteria Methylotenera oryzisoli La3113 [PQVH] 99276 99200 - Arg TCT [ENA] ¡û
>C151104060 LN794158 Betaproteobacteria Candidatus Methylopumilus turicensis MMS-10A-171 [LN794158] 58355 58431 + Arg TCT [Ensembl] ¡û
>ENV09000759 ABSP01031374 Freshwater sediment metagenome lwMethane_C1 497 573 + Arg TCT [ENA] ¡û
>ENV09001305 ABSR01000873 Freshwater sediment metagenome lwMethylamine_C1 1188 1112 - Arg TCT [ENA] ¡û
>ENV09001349 ABSR01002410 Freshwater sediment metagenome lwMethylamine_C1 850 926 + Arg TCT [ENA] ¡û
>ENV09001425 ABSR01006578 Freshwater sediment metagenome lwMethylamine_C1 907 831 - Arg TCT [ENA] ¡û
>ENV09001534 ABSR01025017 Freshwater sediment metagenome lwMethylamine_C1 191 267 + Arg TCT [ENA] ¡û
>W1510019319 BBWF01000017 Betaproteobacteria Sulfuricella sp. T08 [BBWF] 52339 52415 + Arg TCT [ENA] ¡û
>C11114188 CP002252 Betaproteobacteria Methylovorus sp. MP688 [CP002252] 90916 90992 + Arg TCT [Ensembl] ¡û
>W1511431981 JUGE01000001 Betaproteobacteria Methylotenera sp. N17 [JUGE] 2581753 2581829 + Arg TCT [ENA] ¡û
>W1511432015 JUGF01000002 Betaproteobacteria Methylotenera versatilis 7 [JUGF] 838470 838546 + Arg TCT [ENA] ¡û
>W1511433552 JUHH01000001 Betaproteobacteria Methylotenera sp. G11 [JUHH] 1727661 1727585 - Arg TCT [ENA] ¡û
>W11150917 AEWG01000034 Betaproteobacteria Rubrivivax benzoatilyticus JA2 [AEWG] 21644 21568 - Arg TCT [ENA] ¡û
>WENV058116 AACY023318188 Marine microbial communities from Global Ocean Sampling (GOS) 1132 1054 - Arg TCT [ENA]
>W121060099 AJFF01000113 Betaproteobacteria Rubrivivax gelatinosus CBS [AJFF] 2195 2271 + Arg TCT [ENA] ¡û
>W121124625 BAFJ01000005 Betaproteobacteria Sulfuricella denitrificans skB26 [BAFJ] 275985 276061 + Arg TCT [ENA] ¡û
>W1610753565 LNEP01000005 Betaproteobacteria Betaproteobacteria bacterium Ga0077540 [LNEP] 42666 42590 - Arg TCT [ENA] ¡û
>W1611008627 LXUF01000011 Betaproteobacteria Methylovorus sp. MM2 MM1 [LXUF] 551215 551139 - Arg TCT [ENA] ¡û
Identical group No.318303 (6 seq.)
>W1711583414 MNXE01000017 Hydrogenophilia Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE] 3315 3239 - Arg TCT [ENA] ¡û
>WENV180037770 FVAA011683302 [FVAA] soil metagenome; Soil 77 1 - Arg TCT [ENA] ¢þ
>WENV180297515 OBJA01038512 [OBJA] soil metagenome; sediment, water from around vicinity 629 553 - Arg TCT [ENA] ¢þ
>WENV170639308 JFJP01001836 [JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink 621 545 - Arg TCT [ENA] ¢þ
>WENV170651705 JRYG01000640 [JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated 15674 15750 + Arg TCT [ENA] ¢þ
>C191004322 AP018721 Betaproteobacteria Sulfuritortus calidifontis J1A [AP018721] 358962 359038 + Arg TCT - ¡û
Identical group No.373894 (4 seq.)
>W131225581 AUDR01000016 Hydrogenophilia Tepidiphilus margaritifer DSM 15129 [AUDR] 145019 144943 - Arg TCT [ENA] ¡û
>W1510741374 CYHH01000006 Hydrogenophilia Tepidiphilus thermophilus JCM 19170 [CYHH] 22312 22388 + Arg TCT [ENA] ¡û
>W1610632375 LIPU01000006 Hydrogenophilia Tepidiphilus thermophilus [LIPU] 22312 22388 + Arg TCT [ENA] ¡û
>W1710766761 LIPU01000006 Hydrogenophilia Tepidiphilus thermophilus [LIPU] 22312 22388 + Arg TCT [ENA] ¡û
Identical group No.380050 (1 seq.)
>C191003426 AP018558 Hydrogenophilia Hydrogenophilus thermoluteolus TH-1 [AP018558] 908816 908892 + Arg TCT - ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

BACK