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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = TGG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274555 (51 seq.)
>W1711326605
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
445680
445756
+
Pro
TGG
[ENA]
¡û
>C171085192
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
2383516
2383440
-
Pro
TGG
-
¡û
>W131050719
AMXA01000011
Betaproteobacteria
Thauera sp. 28 [AMXA]
83317
83241
-
Pro
TGG
[ENA]
¡û
>W131050762
AMXB01000006
Betaproteobacteria
Thauera sp. 27 [AMXB]
127583
127507
-
Pro
TGG
[ENA]
¡û
>W131050801
AMXC01000002
Betaproteobacteria
Thauera sp. 63 [AMXC]
234496
234420
-
Pro
TGG
[ENA]
¡û
>W131050879
AMXD01000076
Betaproteobacteria
Thauera aminoaromatica S2 [AMXD]
11031
11107
+
Pro
TGG
[ENA]
¡û
>W131050916
AMXE01000007
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [AMXE]
8467
8391
-
Pro
TGG
[ENA]
¡û
>W131050977
AMXF01000067
Betaproteobacteria
Thauera phenylacetica B4P [AMXF]
2853
2929
+
Pro
TGG
[ENA]
¡û
>W131176281
ARJX01000044
Betaproteobacteria
Aromatoleum toluclasticum ATCC 700605 [ARJX]
198379
198303
-
Pro
TGG
[ENA]
¡û
>W131225580
AUDR01000016
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
145128
145052
-
Pro
TGG
[ENA]
¡û
>C001314
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
2308300
2308224
-
Pro
TGG
[Ensembl]
¡û
>C001364
CR555306
Betaproteobacteria
Aromatoleum aromaticum EbN1 [CR555306]
3482256
3482332
+
Pro
TGG
[Ensembl]
¡û
>WENV180298348
OBJA01294473
[OBJA] soil metagenome; sediment, water from around vicinity
14
90
+
Pro
TGG
[ENA]
¢þ
>W141078514
ATJV01000048
Betaproteobacteria
Thauera terpenica 58Eu [ATJV]
200982
201058
+
Pro
TGG
[ENA]
¡û
>W08008010
ABKT01000029
Betaproteobacteria
Thauera sp. MZ1T [ABKT] MZ1T [ABKT]
17118
17045
-
Pro
TGG
[ENA]
¡û
>WENV170000199
AERA01023750
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
301
225
-
Pro
TGG
[ENA]
¢þ
>WENV170560983
CZCA01001741
[CZCA] anaerobic digester metagenome; anaerobic digester
4269
4193
-
Pro
TGG
[ENA]
¢þ
>WENV170650163
JRYD01017488
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
720
796
+
Pro
TGG
[ENA]
¢þ
>WENV170650758
JRYE01016617
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
1415
1491
+
Pro
TGG
[ENA]
¢þ
>WENV170652577
JRYH01007115
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1122
1198
+
Pro
TGG
[ENA]
¢þ
>WENV170653134
JRYI01006043
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
660
736
+
Pro
TGG
[ENA]
¢þ
>WENV170654714
JRYL01008245
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
2271
2195
-
Pro
TGG
[ENA]
¢þ
>C181081487
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
1406044
1405968
-
Pro
TGG
-
¡û
>C181121191
CP025682
Betaproteobacteria
Pseudazoarcus pumilus SY39 [CP025682]
1582822
1582898
+
Pro
TGG
-
¡û
>C181164201
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
1440901
1440825
-
Pro
TGG
-
¡û
>C191019193
CP021731
Betaproteobacteria
Azoarcus sp. DN11 [CP021731]
3099359
3099283
-
Pro
TGG
-
¡û
>C191022908
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
2923410
2923334
-
Pro
TGG
-
¡û
>W141561728
JHYR01000014
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [JHYR]
8731
8655
-
Pro
TGG
[ENA]
¡û
>W1911114379
NOIH01000018
Betaproteobacteria
Thauera propionica KNDSS-Mac4 [NOIH]
16273
16197
-
Pro
TGG
[ENA]
¡û
>W1810444882
PZKC01000001
Betaproteobacteria
Pseudothauera lacus D20 [PZKC]
376110
376034
-
Pro
TGG
[ENA]
¡û
>W1810679163
QKOE01000007
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
117504
117580
+
Pro
TGG
[ENA]
¡û
>C151076213
CP011072
Betaproteobacteria
Azoarcus sp. CIB [CP011072]
2925269
2925193
-
Pro
TGG
-
¡û
>C10113217
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
2131249
2131173
-
Pro
TGG
[Ensembl]
¡û
>WENV11100557
AERA01023750
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
301
225
-
Pro
TGG
[ENA]
¡û
>W1510741373
CYHH01000006
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
22204
22280
+
Pro
TGG
[ENA]
¡û
>W1511398280
JTDM01000013
Betaproteobacteria
Thauera sp. SWB20 [JTDM]
206965
207041
+
Pro
TGG
[ENA]
¡û
>W1511581029
LARU01000004
Betaproteobacteria
Azoarcus sp. PA01 [LARU]
555867
555791
-
Pro
TGG
[ENA]
¡û
>W1511686472
LFRJ01000015
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
2201498
2201422
-
Pro
TGG
[ENA]
¡û
>W11185892
CACR01001381
Betaproteobacteria
Thauera selenatis AX [CACR]
7468
7544
+
Pro
TGG
[ENA]
¡û
>C161075128
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
574625
574549
-
Pro
TGG
[Ensembl]
¡û
>C161095102
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
2381537
2381461
-
Pro
TGG
-
¡û
>W1610042924
BAZL01000591
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
816
892
+
Pro
TGG
[ENA]
¡û
>W1610071709
BCUG01000038
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
22502
22426
-
Pro
TGG
[ENA]
¡û
>C131000298
AP012304
Betaproteobacteria
Azoarcus sp. KH32C [AP012304]
2561876
2561952
+
Pro
TGG
[Ensembl]
¡û
>W1610632374
LIPU01000006
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
22204
22280
+
Pro
TGG
[ENA]
¡û
>W1611063341
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
445680
445756
+
Pro
TGG
[ENA]
¡û
>W1710040084
BAZL01000591
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
816
892
+
Pro
TGG
[ENA]
¡û
>W1710068911
BCUG01000038
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
22502
22426
-
Pro
TGG
[ENA]
¡û
>W1710539438
FNVJ01000001
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
286176
286252
+
Pro
TGG
[ENA]
¡û
>W1710595745
FTMD01000015
Betaproteobacteria
Aromatoleum tolulyticum tolulyticus [FTMD]
119192
119268
+
Pro
TGG
[ENA]
¡û
>W1710766760
LIPU01000006
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
22204
22280
+
Pro
TGG
[ENA]
¡û
Identical group No.276822 (6 seq.)
>W1711414496
MGZO01000020
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
32017
31941
-
Pro
TGG
[ENA]
¡û
>WENV180252617
OBEQ010464439
[OBEQ] groundwater metagenome; groundwater
4167
4091
-
Pro
TGG
[ENA]
¢þ
>WENV181190993
OEPS010012601
[OEPS] soil metagenome; soil
1083
1159
+
Pro
TGG
[ENA]
¢þ
>C151002762
AP014637
Gammaproteobacteria
Pseudomonas sp. StFLB209 [AP014637]
1090458
1090382
-
Pro
TGG
[Ensembl]
¡û
>W1610593896
LDUG01000048
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
29288
29212
-
Pro
TGG
[ENA]
¡û
>W1710713371
LDUG01000048
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
29288
29212
-
Pro
TGG
[ENA]
¡û
Identical group No.287666 (19 seq.)
>W1710892523
LNDV01000025
Betaproteobacteria
Betaproteobacteria bacterium Ga0077526 [LNDV]
176768
176692
-
Pro
TGG
[ENA]
¡û
>W1711386456
MEFK01000118
Betaproteobacteria
Thiobacillus sp. SCN 63-374 [MEFK]
1732
1808
+
Pro
TGG
[ENA]
¡û
>W1711387353
MEGO01000008
Betaproteobacteria
Thiobacillus sp. SCN 64-317 [MEGO]
852
928
+
Pro
TGG
[ENA]
¡û
>W1711387397
MEGP01000015
Betaproteobacteria
Thiobacillus sp. SCN 63-57 [MEGP]
31516
31440
-
Pro
TGG
[ENA]
¡û
>W1711423784
MIDJ01000014
Betaproteobacteria
Thiobacillus sp. GWE1_62_9 [MIDJ]
6041
6117
+
Pro
TGG
[ENA]
¡û
>W1711504054
MKUE01000129
Betaproteobacteria
Thiobacillus sp. 65-1059 [MKUE]
6109
6185
+
Pro
TGG
[ENA]
¡û
>W1711504119
MKUG01000093
Betaproteobacteria
Thiobacillus sp. 65-1402 [MKUG]
4347
4271
-
Pro
TGG
[ENA]
¡û
>W1711506507
MKWL01000021
Betaproteobacteria
Thiobacillus sp. 0-1251 [MKWL]
337241
337317
+
Pro
TGG
[ENA]
¡û
>W1711506558
MKWM01000074
Betaproteobacteria
Thiobacillus sp. 63-78 [MKWM]
14303
14227
-
Pro
TGG
[ENA]
¡û
>W1711583413
MNXE01000017
Hydrogenophilia
Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE]
3432
3356
-
Pro
TGG
[ENA]
¡û
>W131160267
AQWL01000004
Betaproteobacteria
Thiobacillus denitrificans DSM 12475 [AQWL]
112235
112311
+
Pro
TGG
[ENA]
¡û
>W131168076
ARDU01000002
Betaproteobacteria
Thiobacillus thioparus DSM 505 [ARDU]
35652
35576
-
Pro
TGG
[ENA]
¡û
>C025417
CP000116
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [CP000116]
729311
729235
-
Pro
TGG
[Ensembl]
¡û
>WENV180311007
OBJT01083224
[OBJT] soil metagenome; soil
76
152
+
Pro
TGG
[ENA]
¢þ
>WENV181167545
OEIU01041731
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1264
1340
+
Pro
TGG
[ENA]
¢þ
>WENV170007709
AMWB02152151
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
13157
13081
-
Pro
TGG
[ENA]
¢þ
>WENV170709395
LNFM01000311
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
175314
175238
-
Pro
TGG
[ENA]
¢þ
>W09101588
AAFH01000004
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [AAFH]
180925
181001
+
Pro
TGG
[ENA]
¡û
>W1610752789
LNDV01000025
Betaproteobacteria
Betaproteobacteria bacterium Ga0077526 [LNDV]
176768
176692
-
Pro
TGG
[ENA]
¡û
Identical group No.311833 (2 seq.)
>WENV181191972
OEPS010316050
[OEPS] soil metagenome; soil
229
305
+
Pro
TGG
[ENA]
¢þ
>C191003425
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
908698
908774
+
Pro
TGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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