This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = TGT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.407890 (1 seq.)
>W1711583408
MNXE01000011
Hydrogenophilia
Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE]
33337
33261
-
Thr
TGT
[ENA]
¡û
Identical group No.458198 (1 seq.)
>W1711414500
MGZO01000030
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
6375
6450
+
Thr
TGT
[ENA]
¡û
Identical group No.565163 (4 seq.)
>W131225568
AUDR01000015
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
250375
250449
+
Thr
TGT
[ENA]
¡û
>W1510741400
CYHH01000019
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
7367
7295
-
Thr
TGT
[ENA]
¡û
>W1610632401
LIPU01000019
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
7367
7295
-
Thr
TGT
[ENA]
¡û
>W1710766787
LIPU01000019
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
7367
7295
-
Thr
TGT
[ENA]
¡û
Identical group No.572234 (1 seq.)
>C191003434
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
1719908
1719983
+
Thr
TGT
-
¡û
Identical group No.656810 (6 seq.)
>W1710892853
LNEE01000031
Betaproteobacteria
Betaproteobacteria bacterium Ga0077532 [LNEE]
11097
11026
-
Thr
TGT
[ENA]
¡û
>W1711414501
MGZO01000039
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
13522
13596
+
Thr
TGT
[ENA]
¡û
>WENV170557145
CXWL01020118
[CXWL] groundwater metagenome; biofilm material
3789
3715
-
Thr
TGT
[ENA]
¢þ
>WENV170566458
FKKE01032061
[FKKE] freshwater metagenome; freshwater
812
886
+
Thr
TGT
[ENA]
¢þ
>WENV170709129
LNFM01000128
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
11093
11022
-
Thr
TGT
[ENA]
¢þ
>W1610753119
LNEE01000031
Betaproteobacteria
Betaproteobacteria bacterium Ga0077532 [LNEE]
11097
11026
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK