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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrogenophilia
Anticodon = TTT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458204 (9 seq.)
>W1711414526
MGZO01000119
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
7924
7999
+
Lys
TTT
[ENA]
¡û
>W1711421870
MIAF01000213
Betaproteobacteria
Sideroxydans sp. RIFOXYD2_FULL_59_7 [MIAF]
393
318
-
Lys
TTT
[ENA]
¡û
>W1711582063
MNUX01000043
Betaproteobacteria
Gallionellaceae bacterium CG1_02_60_325 [MNUX]
10278
10203
-
Lys
TTT
[ENA]
¡û
>W1711582085
MNUX01000129
Betaproteobacteria
Gallionellaceae bacterium CG1_02_60_325 [MNUX]
5081
5156
+
Lys
TTT
[ENA]
¡û
>WENV180117826
OARM01000255
[OARM] human gut metagenome; ENVO:feces
6931
6856
-
Lys
TTT
[ENA]
¢þ
>WENV180271672
OBEQ012300320
[OBEQ] groundwater metagenome; groundwater
145
70
-
Lys
TTT
[ENA]
¢þ
>WENV181293667
OFHG01014128
[OFHG] soil metagenome; Clay
688
613
-
Lys
TTT
[ENA]
¢þ
>WENV181297741
OFHK01119099
[OFHK] soil metagenome; Clay
385
310
-
Lys
TTT
[ENA]
¢þ
>WENV181844909
OGVW01048758
[OGVW] freshwater metagenome; freshwater
471
546
+
Lys
TTT
[ENA]
¢þ
Identical group No.482313 (11 seq.)
>WENV181311496
OFJB01003157
[OFJB] sludge metagenome; sludge
2441
2366
-
Lys
TTT
[ENA]
¢þ
>WENV181402043
OFTY01000056
[OFTY] sludge metagenome; sludge
112055
111980
-
Lys
TTT
[ENA]
¢þ
>WENV170653796
JRYJ01109413
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
250
322
+
Lys
TTT
[ENA]
¢þ
>C191003454
AP018558
Hydrogenophilia
Hydrogenophilus thermoluteolus TH-1 [AP018558]
648231
648156
-
Lys
TTT
-
¡û
>W1911244735
NSJB01000004
Betaproteobacteria
Vandammella animalimorsus NML00-0135 [NSJB]
61365
61440
+
Lys
TTT
[ENA]
¡û
>W1911244790
NSJC01000022
Betaproteobacteria
Vandammella animalimorsus NML97-0112 [NSJC]
16251
16326
+
Lys
TTT
[ENA]
¡û
>W1911244834
NSJD01000028
Betaproteobacteria
Vandammella animalimorsus NML79-0751 [NSJD]
25208
25283
+
Lys
TTT
[ENA]
¡û
>W1911244861
NSJE01000005
Betaproteobacteria
Vandammella animalimorsus NML120219 [NSJE]
77732
77807
+
Lys
TTT
[ENA]
¡û
>W1911244927
NSJF01000004
Betaproteobacteria
Vandammella animalimorsus NML03-0146 [NSJF]
66649
66724
+
Lys
TTT
[ENA]
¡û
>W1911270483
NTBH01000010
Betaproteobacteria
Vandammella animalimorsus NML91-0036 [NTBH]
83497
83572
+
Lys
TTT
[ENA]
¡û
>W1911270526
NTBI01000012
Betaproteobacteria
Vandammella animalimorsus NML91-0035 [NTBI]
83497
83572
+
Lys
TTT
[ENA]
¡û
Identical group No.483064 (28 seq.)
>W1711168278
LVXY01000001
Betaproteobacteria
Cupriavidus gilardii [LVXY]
377500
377575
+
Lys
TTT
[ENA]
¡û
>W131043704
AMPR01000234
Betaproteobacteria
Cupriavidus sp. HPC(L) [AMPR]
5386
5461
+
Lys
TTT
[ENA]
¡û
>W131225586
AUDR01000018
Hydrogenophilia
Tepidiphilus margaritifer DSM 15129 [AUDR]
99281
99353
+
Lys
TTT
[ENA]
¡û
>WENV180731654
ODGW01004888
[ODGW] human metagenome; G_DNA_Supragingival plaque
2145
2070
-
Lys
TTT
[ENA]
¢þ
>WENV180834683
ODKD01108360
[ODKD] human metagenome; G_DNA_Supragingival plaque
6
81
+
Lys
TTT
[ENA]
¢þ
>WENV180835778
ODKE01012215
[ODKE] human metagenome; G_DNA_Supragingival plaque
32
107
+
Lys
TTT
[ENA]
¢þ
>WENV180938867
ODTX01008431
[ODTX] human metagenome; G_DNA_Supragingival plaque
2390
2465
+
Lys
TTT
[ENA]
¢þ
>WENV180981581
ODVE01032431
[ODVE] human metagenome; G_DNA_Supragingival plaque
1088
1013
-
Lys
TTT
[ENA]
¢þ
>WENV181049456
ODYD01000244
[ODYD] human metagenome; G_DNA_Supragingival plaque
20024
20099
+
Lys
TTT
[ENA]
¢þ
>WENV181070374
OEAE01001093
[OEAE] human metagenome; G_DNA_Supragingival plaque
3863
3938
+
Lys
TTT
[ENA]
¢þ
>WENV181221596
OFCW01000041
[OFCW] microbial mat metagenome; Microbial Mat
5855
5780
-
Lys
TTT
[ENA]
¢þ
>WENV181412292
OGCI01114622
[OGCI] hot springs metagenome; Hot spring water
546
471
-
Lys
TTT
[ENA]
¢þ
>WENV181415604
OGCL01016164
[OGCL] hot springs metagenome; Hot spring water
1440
1515
+
Lys
TTT
[ENA]
¢þ
>WENV170573206
FLYJ01004571
[FLYJ] hot springs metagenome; Sediment
17820
17895
+
Lys
TTT
[ENA]
¢þ
>WENV170965779
MTEV01003538
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
4038
4113
+
Lys
TTT
[ENA]
¢þ
>WENV170966245
MTEX01005063
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
5067
5142
+
Lys
TTT
[ENA]
¢þ
>C181158452
CP027667
Betaproteobacteria
Melaminivora suipulveris SC2-9 [CP027667]
18542
18617
+
Lys
TTT
-
¡û
>W1911502789
OEQA01000007
Betaproteobacteria
Ottowia massiliensis Marseille-P4747 [OEQA]
156303
156378
+
Lys
TTT
[ENA]
¡û
>W1911701415
QNUI01000002
Betaproteobacteria
Azohydromonas sediminis YIM 73032 [QNUI]
46633
46558
-
Lys
TTT
[ENA]
¡û
>W1911702167
QOAZ01000001
Betaproteobacteria
Azohydromonas sediminis SYSU G00088 [QOAZ]
14102
14027
-
Lys
TTT
[ENA]
¡û
>W1810609653
QGUB01000010
Betaproteobacteria
Melaminivora alkalimesophila DSM 26006 [QGUB]
42045
41970
-
Lys
TTT
[ENA]
¡û
>C151069983
CP010516
Betaproteobacteria
Cupriavidus gilardii CR3 [CP010516, CP010517]
682961
683036
+
Lys
TTT
-
¡û
>C151090630
CP012073
Betaproteobacteria
Ottowia sp. oral taxon 894 W10237 [CP012073]
434793
434718
-
Lys
TTT
-
¡û
>W1510741372
CYHH01000005
Hydrogenophilia
Tepidiphilus thermophilus JCM 19170 [CYHH]
44145
44073
-
Lys
TTT
[ENA]
¡û
>W121108918
ALEE01000406
Betaproteobacteria
Melaminivora alkalimesophila CRZ1 [ALEE]
2811
2886
+
Lys
TTT
[ENA]
¡û
>W1610632373
LIPU01000005
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
44145
44073
-
Lys
TTT
[ENA]
¡û
>W1610978193
LVXY01000001
Betaproteobacteria
Cupriavidus gilardii [LVXY]
377500
377575
+
Lys
TTT
[ENA]
¡û
>W1710766759
LIPU01000005
Hydrogenophilia
Tepidiphilus thermophilus [LIPU]
44145
44073
-
Lys
TTT
[ENA]
¡û
Identical group No.603678 (1 seq.)
>W1711583436
MNXE01000058
Hydrogenophilia
Hydrogenophilaceae bacterium CG1_02_62_390 [MNXE]
7977
8052
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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