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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Magnetococcia
Anticodon = CAT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.546237 (4 seq.)
>W1711147292
LVJN01000015
Alphaproteobacteria
Magnetofaba australis IT-1 [LVJN]
436849
436924
+
Met
CAT
[ENA]
¡û
>C012924
CP000471
Alphaproteobacteria
Magnetococcus marinus MC-1 [CP000471]
1004909
1004834
-
Met
CAT
[Ensembl]
¡û
>W09100109
AAAN03000004
Alphaproteobacteria
Magnetococcus marinus MC-1 [AAAN]
32142
32217
+
Met
CAT
[ENA]
¡û
>W2011496994
RXIU01000196
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
848
773
-
Ile2
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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