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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Magnetococcia
HIT:
34 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.48966 (1 seq.)
>W2011496981
RXIU01000040
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
20432
20342
-
Ser
GGA
[ENA]
¡û
Identical group No.48967 (1 seq.)
>W2011496999
RXIU01000455
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
1122
1032
-
Ser
GCT
[ENA]
¡û
Identical group No.76489 (1 seq.)
>W2011496975
RXIU01000013
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
25981
26070
+
Ser
CGA
[ENA]
¡û
Identical group No.120857 (1 seq.)
>W2011496989
RXIU01000105
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
6871
6784
-
Ser
TGA
[ENA]
¡û
Identical group No.163280 (1 seq.)
>W2011496985
RXIU01000054
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
3840
3926
+
Leu
CAA
[ENA]
¡û
Identical group No.163281 (1 seq.)
>W2011496987
RXIU01000085
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
618
532
-
Leu
TAA
[ENA]
¡û
Identical group No.237271 (1 seq.)
>W2011496967
RXIU01000004
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
35387
35303
-
Tyr
GTA
[ENA]
¡û
Identical group No.237272 (1 seq.)
>W2011497000
RXIU01000487
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
1021
1105
+
Leu
GAG
[ENA]
¡û
Identical group No.296991 (1 seq.)
>W2011496972
RXIU01000005
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
3897
3820
-
Cys
GCA
[ENA]
¡û
Identical group No.461246 (1 seq.)
>W2011496976
RXIU01000019
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
24311
24387
+
Ile
GAT
[ENA]
¡û
Identical group No.461247 (1 seq.)
>W2011496979
RXIU01000023
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
1691
1615
-
Asp
GTC
[ENA]
¡û
Identical group No.461248 (1 seq.)
>W2011496982
RXIU01000043
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
15981
15905
-
Arg
CCG
[ENA]
¡û
Identical group No.461249 (1 seq.)
>W2011496983
RXIU01000053
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
7529
7605
+
Pro
TGG
[ENA]
¡û
Identical group No.461250 (1 seq.)
>W2011496992
RXIU01000127
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
8255
8331
+
Pro
CGG
[ENA]
¡û
Identical group No.461251 (1 seq.)
>W2011496993
RXIU01000184
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
261
337
+
Pro
GGG
[ENA]
¡û
Identical group No.461252 (1 seq.)
>W2011496998
RXIU01000346
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
2268
2344
+
Arg
CCT
[ENA]
¡û
Identical group No.681156 (1 seq.)
>W2011496969
RXIU01000004
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
35098
35023
-
Thr
GGT
[ENA]
¡û
Identical group No.681157 (1 seq.)
>W2011496970
RXIU01000004
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
33518
33443
-
Trp
CCA
[ENA]
¡û
Identical group No.681158 (1 seq.)
>W2011496978
RXIU01000023
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
1965
1890
-
Val
TAC
[ENA]
¡û
Identical group No.681159 (1 seq.)
>W2011496980
RXIU01000024
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
8319
8394
+
Glu
CTC
[ENA]
¡û
Identical group No.681160 (1 seq.)
>W2011496984
RXIU01000053
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
7783
7858
+
Arg
CCT
[ENA]
¡û
Identical group No.681161 (1 seq.)
>W2011496986
RXIU01000054
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
126
51
-
Phe
GAA
[ENA]
¡û
Identical group No.681162 (1 seq.)
>W2011496988
RXIU01000098
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
423
348
-
Lys
CTT
[ENA]
¡û
Identical group No.681163 (1 seq.)
>W2011496991
RXIU01000116
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
9866
9941
+
Asn
GTT
[ENA]
¡û
Identical group No.681164 (1 seq.)
>W2011496995
RXIU01000254
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
146
71
-
Ala
GGC
[ENA]
¡û
Identical group No.681165 (1 seq.)
>W2011496996
RXIU01000276
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
1880
1955
+
Lys
TTT
[ENA]
¡û
Identical group No.681166 (1 seq.)
>W2011496997
RXIU01000292
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
672
747
+
Ala
GGC
[ENA]
¡û
Identical group No.681167 (1 seq.)
>W2011497002
RXIU01000541
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
41928
41853
-
Glu
TTC
[ENA]
¡û
Identical group No.681168 (1 seq.)
>W2011497003
RXIU01000545
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
4041
4116
+
Ala
CGC
[ENA]
¡û
Identical group No.839785 (2 seq.)
>W2011496971
RXIU01000005
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
3985
3911
-
Gly
GCC
[ENA]
¡û
>W2011496973
RXIU01000005
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
3791
3717
-
Gly
GCC
[ENA]
¡û
Identical group No.839786 (1 seq.)
>W2011496974
RXIU01000009
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
21900
21826
-
Gln
TTG
[ENA]
¡û
Identical group No.839787 (1 seq.)
>W2011497001
RXIU01000489
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
855
929
+
Thr
CGT
[ENA]
¡û
Identical group No.920734 (1 seq.)
>W2011496968
RXIU01000004
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
35187
35114
-
Gly
TCC
[ENA]
¡û
Identical group No.920735 (1 seq.)
>W2011496990
RXIU01000110
Magnetococcia
Magnetococcales bacterium UR-1 [RXIU]
4360
4287
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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