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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic analysis of viruses in reclaimed water (SRP000673)
Anticodon = GAC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.333582 (11 seq.)
>W1712065963
NGIS01000029
Gammaproteobacteria
Acinetobacter pittii [NGIS]
212
288
+
Val
GAC
[ENA]
¡û
>SRA1005817
SRR014587.221925
Metagenomic analysis of viruses in reclaimed water (SRP000673)
7
83
+
Val
GAC
[SRA]
>W2010117380
BKMZ01000024
Gammaproteobacteria
Acinetobacter pittii TUM15260 [BKMZ]
26797
26873
+
Val
GAC
[ENA]
¡û
>W2010118129
BKNS01000007
Gammaproteobacteria
Acinetobacter seifertii TUM15279 [BKNS]
9305
9229
-
Val
GAC
[ENA]
¡û
>W2010119817
BKPM01000001
Gammaproteobacteria
Acinetobacter nosocomialis TUM15325 [BKPM]
1468955
1468879
-
Val
GAC
[ENA]
¡û
>W2010120143
BKPV01000008
Gammaproteobacteria
Acinetobacter pittii TUM15334 [BKPV]
35123
35047
-
Val
GAC
[ENA]
¡û
>W2010120395
BKQD01000002
Gammaproteobacteria
Acinetobacter pittii TUM15342 [BKQD]
279065
279141
+
Val
GAC
[ENA]
¡û
>W2010124506
BKTK01000002
Gammaproteobacteria
Acinetobacter pittii TUM15428 [BKTK]
57331
57255
-
Val
GAC
[ENA]
¡û
>W2010124692
BKTN01000001
Gammaproteobacteria
Acinetobacter pittii TUM15431 [BKTN]
18526
18602
+
Val
GAC
[ENA]
¡û
>C211261708
CP069496
Gammaproteobacteria
Acinetobacter pittii FDAARGOS_1217 [CP069496]
124601
124677
+
Val
GAC
-
¡û
>W1510018069
BBTV01000002
Gammaproteobacteria
Acinetobacter nosocomialis NBRC 110499 [BBTV]
89640
89716
+
Val
GAC
[ENA]
¡û
Identical group No.741722 (2 seq.)
>SRA1005662
SRR014586.97225
Metagenomic analysis of viruses in reclaimed water (SRP000673)
127
199
+
Val
GAC
[SRA]
>SRA1005678
SRR014586.119151
Metagenomic analysis of viruses in reclaimed water (SRP000673)
127
199
+
Val
GAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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