This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic analysis of viruses in reclaimed water (SRP000673)
Anticodon = TAG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.84518 (1 seq.)
>SRA1005658
SRR014586.89758
Metagenomic analysis of viruses in reclaimed water (SRP000673)
242
156
-
Leu
TAG
[SRA]
Identical group No.204088 (47 seq.)
>W1711075745
LSKR01001533
Actinomycetota
Corynebacterium durum [LSKR]
27386
27470
+
Leu
TAG
[ENA]
¡û
>W1711269067
LZDO01000020
Gammaproteobacteria
Moraxella osloensis [LZDO]
13780
13696
-
Leu
TAG
[ENA]
¡û
>W1711269141
LZDQ01000001
Gammaproteobacteria
Moraxella osloensis [LZDQ]
910657
910741
+
Leu
TAG
[ENA]
¡û
>W1711282125
LZMT01000059
Gammaproteobacteria
Moraxella osloensis [LZMT]
44762
44846
+
Leu
TAG
[ENA]
¡û
>W1711511503
MLCM01000003
Alphaproteobacteria
Enhydrobacter sp. H5 [MLCM]
69968
69884
-
Leu
TAG
[ENA]
¡û
>WENV180283874
OBID01005094
[OBID] metagenome; sludge
3126
3042
-
Leu
TAG
[ENA]
¡û
>W141073517
ASSF01000210
Bacillota
Paenibacillus sophorae S27 [ASSF]
8769
8853
+
Leu
TAG
[ENA]
¡û
>WENV181199594
OERH01013432
[OERH] metagenome; water of meat washing
76
160
+
Leu
TAG
[ENA]
¡û
>WENV181222812
OFDC01000326
[OFDC] hot springs metagenome; Water
15213
15129
-
Leu
TAG
[ENA]
¡û
>C181001866
AP017381
Gammaproteobacteria
Moraxella osloensis KMC41 [AP017381]
1551334
1551418
+
Leu
TAG
-
¡û
>C181096900
CP024176
Gammaproteobacteria
Moraxella osloensis YHS [CP024176]
1590784
1590868
+
Leu
TAG
-
¡û
>C181096947
CP024180
Gammaproteobacteria
Moraxella osloensis KSH [CP024180]
1503979
1504063
+
Leu
TAG
-
¡û
>C181096994
CP024185
Gammaproteobacteria
Moraxella osloensis TT16 [CP024185]
1589849
1589933
+
Leu
TAG
-
¡û
>C181099965
CP024443
Gammaproteobacteria
Moraxella osloensis NP7 [CP024443]
1466852
1466936
+
Leu
TAG
-
¡û
>C191176308
CP040257
Gammaproteobacteria
Moraxella osloensis MOXF1 [CP040257]
357768
357684
-
Leu
TAG
-
¡û
>W1910871582
NCXF01000003
Gammaproteobacteria
Moraxella osloensis OG2 [NCXF]
168149
168233
+
Leu
TAG
[ENA]
¡û
>W1911543869
ORZI01000241
Gammaproteobacteria
Xanthomonas fragariae PD 2660 [ORZI]
35401
35485
+
Leu
TAG
[ENA]
¡û
>W1810190238
PKJS01000001
Gammaproteobacteria
Moraxella osloensis UMB0416 [PKJS]
161333
161249
-
Leu
TAG
[ENA]
¡û
>SRA1005762
SRR014587.33477
Metagenomic analysis of viruses in reclaimed water (SRP000673)
60
144
+
Leu
TAG
[SRA]
>W2010308394
CABWKP010000045
Gammaproteobacteria
Moraxellaceae bacterium 17A [CABWKP]
202046
201962
-
Leu
TAG
[ENA]
¡û
>W2010309163
CABWLD010000013
Alphaproteobacteria
Enhydrobacter sp. AX1 [CABWLD]
164991
165075
+
Leu
TAG
[ENA]
¡û
>W2010310442
CABWMB010000045
Alphaproteobacteria
Enhydrobacter sp. 8BJ [CABWMB]
618447
618531
+
Leu
TAG
[ENA]
¡û
>W2010940312
NCXF01000003
Gammaproteobacteria
Moraxella osloensis OG2 [NCXF]
168149
168233
+
Leu
TAG
[ENA]
¡û
>W2011172929
ORZI01000241
Gammaproteobacteria
Xanthomonas fragariae PD 2660 [ORZI]
35401
35485
+
Leu
TAG
[ENA]
¡û
>W2011522797
SADG01000016
Gammaproteobacteria
Leucothrix sp. C3212 [SADG]
47181
47265
+
Leu
TAG
[ENA]
¡û
>W2011685110
SRVI01000015
Unclassified
bacterium M00.F.Ca.ET.230.01.1.1 [SRVI]
170316
170232
-
Leu
TAG
[ENA]
¡û
>W2011831036
UGPY01000001
Gammaproteobacteria
Moraxella osloensis NCTC10465 [UGPY]
1023479
1023395
-
Leu
TAG
[ENA]
¡û
>W2011989739
VDRQ01000001
Gammaproteobacteria
Moraxella osloensis DE0456 [VDRQ]
1002298
1002382
+
Leu
TAG
[ENA]
¡û
>W2110035660
BMPS01000008
Actinomycetota
Streptomyces cinereus JCM 3040 [BMPS]
43973
44057
+
Leu
TAG
[ENA]
¡û
>W2110166386
JABAHK010000003
Gammaproteobacteria
Moraxella osloensis 200931 [JABAHK]
165631
165715
+
Leu
TAG
[ENA]
¡û
>W2110166424
JABAHL010000001
Gammaproteobacteria
Moraxella osloensis 8444 [JABAHL]
66489
66405
-
Leu
TAG
[ENA]
¡û
>W2110166477
JABAHM010000001
Gammaproteobacteria
Moraxella osloensis 71383 [JABAHM]
1080880
1080964
+
Leu
TAG
[ENA]
¡û
>W2110454310
JAETXO010000002
Gammaproteobacteria
Moraxella osloensis FDAARGOS_1129 [JAETXO]
1629743
1629827
+
Leu
TAG
[ENA]
¡û
>W10106183
ACYI01000002
Alphaproteobacteria
Enhydrobacter aerosaccus SK60 [ACYI]
77766
77682
-
Leu
TAG
[ENA]
¡û
>C211214881
CP065751
Gammaproteobacteria
Moraxella osloensis FDAARGOS_870 [CP065751]
1379576
1379492
-
Leu
TAG
-
¡û
>C211242091
CP068109
Gammaproteobacteria
Moraxella osloensis FDAARGOS_1130 [CP068109]
1020454
1020370
-
Leu
TAG
-
¡û
>C211260290
CP069437
Gammaproteobacteria
Moraxella osloensis FDAARGOS_1202 [CP069437]
137475
137391
-
Leu
TAG
-
¡û
>C211402099
CP083409
Gammaproteobacteria
Moraxella osloensis FLMOS1 [CP083409]
264569
264653
+
Leu
TAG
-
¡û
>C241117824
CP047226
Gammaproteobacteria
Moraxella osloensis YV1 [CP047226]
1570868
1570952
+
Leu
TAG
-
¡û
>C241322549
CP135138
Gammaproteobacteria
Moraxella sp. DOX410 [CP135138]
879877
879793
-
Leu
TAG
-
¡û
>W11108506
ACYI01000002
Alphaproteobacteria
Enhydrobacter aerosaccus SK60 [ACYI]
77766
77682
-
Leu
TAG
[ENA]
¡û
>W1511705951
LGSW01000004
Alphaproteobacteria
Enhydrobacter aerosaccus CGMCC9176 [LGSW]
104739
104655
-
Leu
TAG
[ENA]
¡û
>C161069204
CP014234
Gammaproteobacteria
Moraxella osloensis CCUG 350 [CP014234]
623059
623143
+
Leu
TAG
[Ensembl]
¡û
>W1610915050
LSKR01001533
Actinomycetota
Corynebacterium durum [LSKR]
27386
27470
+
Leu
TAG
[ENA]
¡û
>W1611029879
LZDO01000020
Gammaproteobacteria
Moraxella osloensis [LZDO]
13780
13696
-
Leu
TAG
[ENA]
¡û
>W1611029953
LZDQ01000001
Gammaproteobacteria
Moraxella osloensis [LZDQ]
910657
910741
+
Leu
TAG
[ENA]
¡û
>W1611041336
LZMT01000059
Gammaproteobacteria
Moraxella osloensis [LZMT]
44762
44846
+
Leu
TAG
[ENA]
¡û
Identical group No.257280 (1 seq.)
>SRA1005584
SRR014584.211929
Metagenomic analysis of viruses in reclaimed water (SRP000673)
87
5
-
Leu
TAG
[SRA]
Identical group No.257282 (2 seq.)
>SRA1005795
SRR014587.159171
Metagenomic analysis of viruses in reclaimed water (SRP000673)
158
241
+
Leu
TAG
[SRA]
>SRA1005814
SRR014587.202313
Metagenomic analysis of viruses in reclaimed water (SRP000673)
158
241
+
Leu
TAG
[SRA]
Identical group No.259268 (73 seq.)
>W1710862663
LMEO01000014
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
15
98
+
Leu
TAG
[ENA]
¡û
>W1710862671
LMEO01000023
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
312
395
+
Leu
TAG
[ENA]
¡û
>W1710862672
LMEO01000023
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
472
555
+
Leu
TAG
[ENA]
¡û
>W1710879851
LMRY01000018
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
320
403
+
Leu
TAG
[ENA]
¡û
>W1710880129
LMSD01000017
Bacillota
Paenibacillus sp. Soil750 [LMSD]
61218
61137
-
Leu
TAG
[ENA]
¡û
>W1710880170
LMSD01000029
Bacillota
Paenibacillus sp. Soil750 [LMSD]
22314
22233
-
Leu
TAG
[ENA]
¡û
>W1710880489
LMSJ01000020
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
658
739
+
Leu
TAG
[ENA]
¡û
>W1710880498
LMSJ01000035
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
56464
56381
-
Leu
TAG
[ENA]
¡û
>W1710880798
LMSP01000024
Bacillota
Paenibacillus sp. Soil787 [LMSP]
330
411
+
Leu
TAG
[ENA]
¡û
>W1710880849
LMSP01000037
Bacillota
Paenibacillus sp. Soil787 [LMSP]
9147
9064
-
Leu
TAG
[ENA]
¡û
>W1710880850
LMSP01000037
Bacillota
Paenibacillus sp. Soil787 [LMSP]
9044
8961
-
Leu
TAG
[ENA]
¡û
>W1711252521
LYPB01000052
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
23757
23676
-
Leu
TAG
[ENA]
¡û
>W1711252579
LYPB01000093
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
66275
66194
-
Leu
TAG
[ENA]
¡û
>W1711252587
LYPB01000097
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
3480
3563
+
Leu
TAG
[ENA]
¡û
>W1711252602
LYPC01000008
Bacillota
Paenibacillus pectinilyticus [LYPC]
953
1034
+
Leu
TAG
[ENA]
¡û
>W1711252667
LYPC01000019
Bacillota
Paenibacillus pectinilyticus [LYPC]
106322
106241
-
Leu
TAG
[ENA]
¡û
>W1711252685
LYPC01000032
Bacillota
Paenibacillus pectinilyticus [LYPC]
1
83
+
Leu
TAG
[ENA]
¡û
>W131229617
AUGY01000083
Bacillota
Paenibacillus alginolyticus DSM 5050 [AUGY]
35981
35898
-
Leu
TAG
[ENA]
¡û
>W131229637
AUGY01000105
Bacillota
Paenibacillus alginolyticus DSM 5050 [AUGY]
24370
24289
-
Leu
TAG
[ENA]
¡û
>W1711338676
MBTG01000052
Bacillota
Paenibacillus ferrarius [MBTG]
27932
27853
-
Leu
TAG
[ENA]
¡û
>W141564707
JIAZ01000020
Bacillota
Paenibacillus sp. URHA0014 [JIAZ]
116787
116704
-
Leu
TAG
[ENA]
¡û
>W141564761
JIAZ01000041
Bacillota
Paenibacillus sp. URHA0014 [JIAZ]
95
178
+
Leu
TAG
[ENA]
¡û
>SRA1005924
SRR014589.53067
Metagenomic analysis of viruses in reclaimed water (SRP000673)
91
172
+
Leu
TAG
[SRA]
>SRA1005938
SRR014589.62685
Metagenomic analysis of viruses in reclaimed water (SRP000673)
136
217
+
Leu
TAG
[SRA]
>SRA1005945
SRR014589.66531
Metagenomic analysis of viruses in reclaimed water (SRP000673)
61
142
+
Leu
TAG
[SRA]
>SRA1005963
SRR014589.76861
Metagenomic analysis of viruses in reclaimed water (SRP000673)
249
168
-
Leu
TAG
[SRA]
>SRA1005983
SRR014589.89465
Metagenomic analysis of viruses in reclaimed water (SRP000673)
61
142
+
Leu
TAG
[SRA]
>SRA1006008
SRR014589.104206
Metagenomic analysis of viruses in reclaimed water (SRP000673)
12
93
+
Leu
TAG
[SRA]
>SRA1006047
SRR014589.146365
Metagenomic analysis of viruses in reclaimed water (SRP000673)
46
127
+
Leu
TAG
[SRA]
>SRA1006053
SRR014589.152700
Metagenomic analysis of viruses in reclaimed water (SRP000673)
11
94
+
Leu
TAG
[SRA]
>SRA1006111
SRR014589.203463
Metagenomic analysis of viruses in reclaimed water (SRP000673)
78
159
+
Leu
TAG
[SRA]
>SRA1006121
SRR014589.222072
Metagenomic analysis of viruses in reclaimed water (SRP000673)
14
95
+
Leu
TAG
[SRA]
>W2010473730
JAAIKC010000012
Bacillota
Paenibacillus sp. SYP-B3998 [JAAIKC]
160235
160153
-
Leu
TAG
[ENA]
¡û
>W2010473760
JAAIKC010000015
Bacillota
Paenibacillus sp. SYP-B3998 [JAAIKC]
108866
108784
-
Leu
TAG
[ENA]
¡û
>W2010473798
JAAIKC010000028
Bacillota
Paenibacillus sp. SYP-B3998 [JAAIKC]
689
771
+
Leu
TAG
[ENA]
¡û
>W2010534799
JAAOZR010000026
Bacillota
Paenibacillus aceris KACC 19194 [JAAOZR]
1405
1486
+
Leu
TAG
[ENA]
¡û
>W2010610890
JABRUY010000008
Bacillota
Paenibacillus frigoriresistens LMG 31322 [JABRUY]
618
700
+
Leu
TAG
[ENA]
¡û
>W2010610957
JABRUY010000065
Bacillota
Paenibacillus frigoriresistens LMG 31322 [JABRUY]
736
817
+
Leu
TAG
[ENA]
¡û
>W2010610976
JABRUY010000083
Bacillota
Paenibacillus frigoriresistens LMG 31322 [JABRUY]
11191
11110
-
Leu
TAG
[ENA]
¡û
>W2010610993
JABRUY010000099
Bacillota
Paenibacillus frigoriresistens LMG 31322 [JABRUY]
3478
3396
-
Leu
TAG
[ENA]
¡û
>W2011496308
RXHU01000125
Bacillota
Paenibacillus whitsoniae MER 54 [RXHU]
1623
1702
+
Leu
TAG
[ENA]
¡û
>W2012048531
VIWN01000003
Bacillota
Paenibacillus sp. 597 [VIWN]
811268
811187
-
Leu
TAG
[ENA]
¡û
>W2012048592
VIWN01000023
Bacillota
Paenibacillus sp. 597 [VIWN]
735
814
+
Leu
TAG
[ENA]
¡û
>W2012048607
VIWN01000025
Bacillota
Paenibacillus sp. 597 [VIWN]
1473
1555
+
Leu
TAG
[ENA]
¡û
>W2012328221
WHNY01000078
Bacillota
Paenibacillus sp. LMG 31461 [WHNY]
666
747
+
Leu
TAG
[ENA]
¡û
>W2012328236
WHNY01000094
Bacillota
Paenibacillus sp. LMG 31461 [WHNY]
51089
51008
-
Leu
TAG
[ENA]
¡û
>W2012328290
WHNZ01000058
Bacillota
Paenibacillus sp. LMG 31457 [WHNZ]
117
36
-
Leu
TAG
[ENA]
¡û
>W2012437603
WTUZ01000008
Bacillota
Paenibacillus sp. 5J-6 [WTUZ]
1012
1093
+
Leu
TAG
[ENA]
¡û
>W2110024826
BMHE01000027
Bacillota
Paenibacillus marchantiophytorum CGMCC 1.15043 [BMHE]
988
1069
+
Leu
TAG
[ENA]
¡û
>W2110024881
BMHE01000079
Bacillota
Paenibacillus marchantiophytorum CGMCC 1.15043 [BMHE]
669
748
+
Leu
TAG
[ENA]
¡û
>W2110539208
JAGGKV010000049
Bacillota
Paenibacillus aceris DSM 24950 [JAGGKV]
7385
7304
-
Leu
TAG
[ENA]
¡û
>C231491766
CP104467
Bacillota
Paenibacillus sp. SS4 [CP104467]
7167551
7167469
-
Leu
TAG
-
¡û
>C241293435
CP130319
Bacillota
Paenibacillus sp. MBLB1832 [CP130319]
5464775
5464693
-
Leu
TAG
-
¡û
>C241293447
CP130319
Bacillota
Paenibacillus sp. MBLB1832 [CP130319]
5360288
5360207
-
Leu
TAG
-
¡û
>W1610725009
LMEO01000014
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
15
98
+
Leu
TAG
[ENA]
¡û
>W1610725017
LMEO01000023
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
312
395
+
Leu
TAG
[ENA]
¡û
>W1610725018
LMEO01000023
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
472
555
+
Leu
TAG
[ENA]
¡û
>W1610742197
LMRY01000018
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
320
403
+
Leu
TAG
[ENA]
¡û
>W1610742475
LMSD01000017
Bacillota
Paenibacillus sp. Soil750 [LMSD]
61218
61137
-
Leu
TAG
[ENA]
¡û
>W1610742516
LMSD01000029
Bacillota
Paenibacillus sp. Soil750 [LMSD]
22314
22233
-
Leu
TAG
[ENA]
¡û
>W1610742835
LMSJ01000020
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
658
739
+
Leu
TAG
[ENA]
¡û
>W1610742844
LMSJ01000035
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
56464
56381
-
Leu
TAG
[ENA]
¡û
>W1610743144
LMSP01000024
Bacillota
Paenibacillus sp. Soil787 [LMSP]
330
411
+
Leu
TAG
[ENA]
¡û
>W1610743195
LMSP01000037
Bacillota
Paenibacillus sp. Soil787 [LMSP]
9147
9064
-
Leu
TAG
[ENA]
¡û
>W1610743196
LMSP01000037
Bacillota
Paenibacillus sp. Soil787 [LMSP]
9044
8961
-
Leu
TAG
[ENA]
¡û
>W1611017309
LYPB01000052
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
23757
23676
-
Leu
TAG
[ENA]
¡û
>W1611017367
LYPB01000093
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
66275
66194
-
Leu
TAG
[ENA]
¡û
>W1611017375
LYPB01000097
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
3480
3563
+
Leu
TAG
[ENA]
¡û
>W1611017390
LYPC01000008
Bacillota
Paenibacillus pectinilyticus [LYPC]
953
1034
+
Leu
TAG
[ENA]
¡û
>W1611017455
LYPC01000019
Bacillota
Paenibacillus pectinilyticus [LYPC]
106322
106241
-
Leu
TAG
[ENA]
¡û
>W1611017473
LYPC01000032
Bacillota
Paenibacillus pectinilyticus [LYPC]
1
83
+
Leu
TAG
[ENA]
¡û
>W1710523754
FNIF01000024
Bacillota
Paenibacillus sp. yr247 [FNIF]
798
881
+
Leu
TAG
[ENA]
¡û
>W1710523778
FNIF01000037
Bacillota
Paenibacillus sp. yr247 [FNIF]
667
750
+
Leu
TAG
[ENA]
¡û
Identical group No.263920 (2 seq.)
>SRA1006007
SRR014589.101301
Metagenomic analysis of viruses in reclaimed water (SRP000673)
177
97
-
Leu
TAG
[SRA]
>SRA1006065
SRR014589.157602
Metagenomic analysis of viruses in reclaimed water (SRP000673)
170
251
+
Leu
TAG
[SRA]
Identical group No.274048 (5 seq.)
>SRA1005448
SRR014584.13160
Metagenomic analysis of viruses in reclaimed water (SRP000673)
80
157
+
Leu
TAG
[SRA]
>SRA1005500
SRR014584.103730
Metagenomic analysis of viruses in reclaimed water (SRP000673)
76
153
+
Leu
TAG
[SRA]
>SRA1005525
SRR014584.138685
Metagenomic analysis of viruses in reclaimed water (SRP000673)
76
153
+
Leu
TAG
[SRA]
>SRA1005613
SRR014584.261803
Metagenomic analysis of viruses in reclaimed water (SRP000673)
80
157
+
Leu
TAG
[SRA]
>SRA1005733
SRR014586.215115
Metagenomic analysis of viruses in reclaimed water (SRP000673)
117
194
+
Leu
TAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK